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Dengue Virus
A list of dengue virus related entries in the PDB
as determined by a keyword search on June 23, 2008
| Structure ID | Title | Authors | Publication Year | Journal Name | Volume ID | First Page | Pubmed |
| 1BEF | Dengue virus NS3 serine protease. Crystal structure and insights into interaction of the active site with substrates by molecular modeling and structural analysis of mutational effects. | Murthy, H.M., Clum, S., Padmanabhan, R. | 1999 | J.Biol.Chem. | 274 | 5573 | 10026173 |
| 1DF9 | Crystal structure of Dengue virus NS3 protease in complex with a Bowman-Birk inhibitor: implications for flaviviral polyprotein processing and drug design. | Murthy, H.M., Judge, K., DeLucas, L., Padmanabhan, R. | 2000 | J.Mol.Biol. | 301 | 759 | 10966782 |
| 1K4R | Structure of dengue virus: implications for flavivirus organization, maturation, and fusion. | Kuhn, R.J., Zhang, W., Rossmann, M.G., Pletnev, S.V., Corver, J., Lenches, E., Jones, C.T., Mukhopadhyay, S., Chipman, P.R., Strauss, E.G., Baker, T.S., Strauss, J.H. | 2002 | Cell | 108 | 717 | 11893341 |
| 1L9K | An RNA cap (nucleoside-2'-O-) methyltransferase in the flavivirus RNA polymerase NS5: crystal structure and functional characterization | Egloff, M.P., Benarroch, D., Selisko, B., Romette, J.L., Canard, B. | 2002 | Embo J. | 21 | 2757 | 12032088 |
| 1N6G | Structures of Immature flavivirus particles | Zhang, Y., Corver, J., Chipman, P.R., Zhang, W., Pletnev, S.V., Sedlak, D., Baker, T.S., Strauss, J.H., Kuhn, R.J., Rossmann, M.G. | 2003 | EMBO J. | 22 | 2604 | 12773377 |
| 1OAN | A ligand-binding pocket in the dengue virus envelope glycoprotein. | Modis, Y., Ogata, S., Clements, D., Harrison, S.C. | 2003 | Proc.Natl.Acad.Sci.Usa | 100 | 6986 | 12759475 |
| 1OK8 | Structure of the dengue virus envelope protein after membrane fusion. | Modis, Y., Ogata, S., Clements, D., Harrison, S.C. | 2004 | Nature | 427 | 313 | 14737159 |
| 1OKE | A ligand-binding pocket in the dengue virus envelope glycoprotein. | Modis, Y., Ogata, S., Clements, D., Harrison, S.C. | 2003 | Proc.Natl.Acad.Sci.Usa | 100 | 6986 | 12759475 |
| 1P58 | Visualization of membrane protein domains by cryo-electron microscopy of dengue virus | Zhang, W., Chipman, P.R., Corver, J., Johnson, P.R., Zhang, Y., Mukhopadhyay, S., Baker, T.S., Strauss, J.H., Rossmann, M.G., Kuhn, R.J. | 2003 | Nat.Struct.Biol. | 10 | 907 | 14528291 |
| 1R6A | A structural basis for the inhibition of the NS5 dengue virus mRNA 2'-O-methyltransferase domain by ribavirin 5'-triphosphate. | Benarroch, D., Egloff, M.P., Mulard, L., Guerreiro, C., Romette, J.L., Canard, B. | 2004 | J.Biol.Chem. | 279 | 35638 | 15152003 |
| 1R6R | Solution structure of dengue virus capsid protein reveals another fold | Ma, L., Jones, C.T., Groesch, T.D., Kuhn, R.J., Post, C.B. | 2004 | Proc.Natl.Acad.Sci.USA | 101 | 3414 | 14993605 |
| 1TG8 | Conformational changes of the flavivirus e glycoprotein | Zhang, Y., Zhang, W., Ogata, S., Clements, D., Strauss, J.H., Baker, T.S., Kuhn, R.J., Rossmann, M.G. | 2004 | Structure | 12 | 1607 | 15341726 |
| 1TGE | Conformational changes of the flavivirus e glycoprotein. | Zhang, Y., Zhang, W., Ogata, S., Clements, D., Strauss, J.H., Baker, T.S., Kuhn, R.J., Rossmann, M.G. | 2004 | Structure | 12 | 1607 | 15341726 |
| 1THD | Conformational changes of the flavivirus e glycoprotein | Zhang, Y., Zhang, W., Ogata, S., Clements, D., Strauss, J.H., Baker, T.S., Kuhn, R.J., Rossmann, M.G. | 2004 | Structure | 12 | 1607 | 15341726 |
| 1UZG | Variable surface epitopes in the crystal structure of dengue virus type 3 envelope glycoprotein. | Modis, Y., Ogata, S., Clements, D., Harrison, S.C. | 2005 | J.Virol. | 79 | 1223 | 15613349 |
| 2B6B | Cryo-EM reconstruction of dengue virus in complex with the carbohydrate recognition domain of DC-SIGN | Pokidysheva, E., Zhang, Y., Battisti, A.J., Bator-Kelly, C.M., Chipman, P.R., Xiao, C., Gregorio, G., Hendrickson, W.A., Kuhn, R.J., Rossmann, M.G. | 2006 | Cell | 124 | 485 | 16469696 |
| 2BHR | Structure of the Dengue virus helicase/nucleoside triphosphatase catalytic domain at a resolution of 2.4 A. | Xu, T., Sampath, A., Chao, A., Wen, D., Nanao, M., Chene, P., Vasudevan, S.G., Lescar, J. | 2005 | J.Virol. | 79 | 10278 | 16051821 |
| 2BMF | Structure of the Dengue virus helicase/nucleoside triphosphatase catalytic domain at a resolution of 2.4 A. | Xu, T., Sampath, A., Chao, A., Wen, D., Nanao, M., Chene, P., Vasudevan, S.G., Lescar, J. | 2005 | J.Virol. | 79 | 10278 | 16051821 |
| 2FOM | Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus. | Erbel, P., Schiering, N., D'Arcy, A., Renatus, M., Kroemer, M., Lim, S.P., Yin, Z., Keller, T.H., Vasudevan, S.G., Hommel, U. | 2006 | Nat.Struct.Mol.Biol. | 13 | 372 | 16532006 |
| 2FP7 | Structural basis for the activation of flaviviral NS3 proteases from dengue and West Nile virus. | Erbel, P., Schiering, N., D'Arcy, A., Renatus, M., Kroemer, M., Lim, S.P., Yin, Z., Keller, T.H., Vasudevan, S.G., Hommel, U. | 2006 | Nat.Struct.Mol.Biol. | 13 | 372 | 16532006 |
| 2H0P | Solution structure of the envelope protein domain III of dengue-4 virus. | Volk, D.E., Lee, Y.C., Li, X., Thiviyanathan, V., Gromowski, G.D., Li, L., Lamb, A.R., Beasley, D.W., Barrett, A.D., Gorenstein, D.G. | 2007 | Virology | 364 | 147 | 17395234 |
| 2IJO | Structural evidence for regulation and specificity of flaviviral proteases and evolution of the Flaviviridae fold. | Aleshin, A.E., Shiryaev, S.A., Strongin, A.Y., Liddington, R.C. | 2007 | Protein Sci. | 16 | 795 | 17400917 |
| 2J7U | Crystal Structure of the Dengue Virus RNA-Dependent RNA Polymerase Catalytic Domain at 1.85 Angstrom Resolution. | Yap, T.L., Xu, T., Chen, Y.L., Malet, H., Egloff, M.P., Canard, B., Vasudevan, S.G., Lescar, J. | 2007 | J.Virol. | 81 | 4753 | 17301146 |
| 2J7W | Crystal Structure of the Dengue Virus RNA-Dependent RNA Polymerase Catalytic Domain at 1.85 Angstrom Resolution. | Yap, T.L., Xu, T., Chen, Y.L., Malet, H., Egloff, M.P., Canard, B., Vasudevan, S.G., Lescar, J. | 2007 | J.Virol. | 81 | 4753 | 17301146 |
| 2JSF | Solution structure and neutralizing antibody binding studies of domain III of the dengue-2 virus envelope protein. | Huang, K.C., Lee, M.C., Wu, C.W., Huang, K.J., Lei, H.Y., Cheng, J.W. | 2008 | Proteins | 70 | 1116 | 18004779 |
| 2P1D | An RNA cap (nucleoside-2'-O)-methyltransferase in the flavivirus RNA polymerase NS5: crystal structure and functional characterization | Egloff, M.P., Benarroch, D., Selisko, B., Romette, J.L., Canard, B. | 2002 | EMBO J. | 21 | 2757 | 12032088 |
| 2P3L | Structural and functional analysis of methylation and 5'-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5 | Egloff, M.P., Decroly, E., Malet, H., Selisko, B., Benarroch, D., Ferron, F., Canard, B. | 2007 | J.Mol.Biol. | 372 | 723 | 17686489 |
| 2P3O | Structural and functional analysis of methylation and 5'-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5 | Egloff, M.P., Decroly, E., Malet, H., Selisko, B., Benarroch, D., Ferron, F., Canard, B. | 2007 | J.Mol.Biol. | 372 | 723 | 17686489 |
| 2P3Q | Structural and functional analysis of methylation and 5'-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5 | Egloff, M.P., Decroly, E., Malet, H., Selisko, B., Benarroch, D., Ferron, F., Canard, B. | 2007 | J.Mol.Biol. | 372 | 723 | 17686489 |
| 2P40 | Structural and functional analysis of methylation and 5'-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5 | Egloff, M.P., Decroly, E., Malet, H., Selisko, B., Benarroch, D., Ferron, F., Canard, B. | 2007 | J.Mol.Biol. | 372 | 723 | 17686489 |
| 2P41 | Structural and functional analysis of methylation and 5'-RNA sequence requirements of short capped RNAs by the methyltransferase domain of dengue virus NS5 | Egloff, M.P., Decroly, E., Malet, H., Selisko, B., Benarroch, D., Ferron, F., Canard, B. | 2007 | J.Mol.Biol. | 372 | 723 | 17686489 |
| 2QID | Crystal Structure of Dengue Virus Ns3 Protease in Complex with a Bowman-Birk Inhibitor: Implications for Drug Design. | Murthy, K.H.M., Judge, K., Delucas, L., Padmanabhan, R. | n/a | To be Published | n/a | n/a | n/a |
| 2R29 | Binding of a neutralizing antibody to dengue virus alters the arrangement of surface glycoproteins. | Lok, S.M., Kostyuchenko, V., Nybakken, G.E., Holdaway, H.A., Battisti, A.J., Sukupolvi-Petty, S., Sedlak, D., Fremont, D.H., Chipman, P.R., Roehrig, J.T., Diamond, M.S., Kuhn, R.J., Rossmann, M.G. | 2008 | Nat.Struct.Mol.Biol. | 15 | 312 | 18264114 |
| 2R69 | Binding of a neutralizing antibody to dengue virus resulted in an altered arrangement of the surface glycoproteins | Lok, S.M., Kostyuchenko, V., Nybakken, G.E., Holdaway, H.A., Battisti, A.J., Sukupolvi-Petty, S., Sedlak, D., Fremont, D.H., Chipman, P.R., Roehrig, J.T., Diamond, M.S., Kuhn, R.J., Rossmann, R.G. | n/a | To Be Published | n/a | n/a | n/a |
| 2R6P | Binding of a neutralizing antibody to dengue virus resulted in an altered arrangement of the surface glycoproteins | Lok, S.M., Kostyuchenko, V., Nybakken, G.E., Holdaway, H.A., Battisti, A.J., Sukupolvi-Petty, S., Sedlak, D., Fremont, D.H., Chipman, P.R., Roehrig, J.T., Diamond, M.S., Kuhn, R.J., Rossmann, R.G. | n/a | To Be Published | n/a | n/a | n/a |
| 2VBC | Crystal Structure of the Ns3 Protease-Helicase from Dengue Virus. | Luo, D.H., Xu, T., Hunke, C., Gruber, G., Vasudevan, S.G., Lescar, J. | 2008 | J.Virol. | 82 | 173 | 17942558 |
| 3C5X | The flavivirus precursor membrane-envelope protein complex: structure and maturation. | Li, L., Lok, S.M., Yu, I.M., Zhang, Y., Kuhn, R.J., Chen, J., Rossmann, M.G. | 2008 | Science | 319 | 1830 | 18369147 |
| 3C6D | The flavivirus precursor membrane-envelope protein complex: structure and maturation | Li, L., Lok, S.M., Yu, I.M., Zhang, Y., Kuhn, R.J., Chen, J., Rossmann, M.G. | 2008 | Science | 319 | 1830 | 18369147 |
| 3C6E | The flavivirus precursor membrane-envelope protein complex: structure and maturation. | Li, L., Lok, S.M., Yu, I.M., Zhang, Y., Kuhn, R.J., Chen, J., Rossmann, M.G. | 2008 | Science | 319 | 1830 | 18369147 |
| 3C6R | Structure of the immature dengue virus at low pH primes proteolytic maturation | Yu, I.M., Zhang, W., Holdaway, H.A., Li, L., Kostyuchenko, V.A., Chipman, P.R., Kuhn, R.J., Rossmann, M.G., Chen, J. | 2008 | Science | 319 | 1834 | 18369148 |
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