Virtuelle (Nano) Welten PDB Molecule of the Month 101: Prions

Prions are proteins that can adopt two different forms, a normal form and a misfolded form. This may not seem unusual, since many proteins are flexible and adopt different shapes. However, prions have another unusual characteristic: the misfolded form of the prion can force normal prions to change into the misfolded shape. In this way, a few misfolded prions can corrupt a whole population of normal prions, converting them one-by-one into the misfolded shape. This can have deadly consequences, as the levels of misfolded proteins build up. For instance, misfolding of the PrP prion causes fatal neural diseases in humans and other mammals. To make things worse, misfolded prions are infectious, so a small dose of misfolded prions can infect and corrupt an entire organism.

Mad Cows and Cannibals

The normal form of the prion protein PrP (shown here) is found on the surface of nerve cells, but when it changes into its misfolded form, it aggregates into long fibrils that clog up the normal functioning of the brain. Infection occurs when a little bit of the misfolded protein is eaten or accidentally gets into the blood through an injury. A devastating example occurred in a native population in Papua New Guinea, where ritual cannibalism was part of funeral ceremonies. The epidemic probably started when one person developed the disease spontaneously (PrP occasionally adopts the misfolded state all by itself, causing very rare sporadic cases of the disease). Then the misfolded prions spread through the community when the infected person was eaten. More recently, there has been concern that the prions that cause mad cow disease could spread to humans by eating infected meat. The cow PrP protein is very similar to human PrP, and several cases of this type of infection have been seen.

Prion Protein

The normal prion PrP is a flexible protein composed of several parts. The picture shown here is constructed from several PDB files. The large domain at left is from PDB entry 1qm2. It has a lipid attached at the bottom, which normally anchors the protein to the surface of nerve cells, and two carbohydrate chains (all shown in orange, and not included in the PDB file). The rest of the protein chain is largely flexible, and two portions of it have been studied by NMR spectroscopy, in PDB entries 1oei and 1skh. In spite of years of intense study, PrP still holds many mysteries. It is found on nerve cells, but its precise function is still a matter of conjecture. Also, researchers have not yet discovered the structure of the misfolded, infectious state of PrP. The structure on the following two pages, however, will give you some idea of what might be happening.