A list of 'Thymine Dimers' related entries in the PDB
as determined by a keyword search on June 29, 2007
Structure ID |
Title |
Authors |
Publication Year |
Journal Name |
Volume ID |
First Page |
Pubmed |
2JA5 |
Cpd Damage Recognition by Transcribing RNA Polymerase II |
Brueckner, F., Hennecke, U., Carell, T., Cramer, P. |
2007 |
Science |
315 |
859 |
n/a |
2JA6 |
Cpd Damage Recognition by Transcribing RNA Polymerase II |
Brueckner, F., Hennecke, U., Carell, T., Cramer, P. |
2007 |
Science |
315 |
859 |
n/a |
2JA7 |
Cpd Damage Recognition by Transcribing RNA Polymerase II |
Brueckner, F., Hennecke, U., Carell, T., Cramer, P. |
2007 |
Science |
315 |
859 |
n/a |
2JA8 |
Cpd Damage Recognition by Transcribing RNA Polymerase II |
Brueckner, F., Hennecke, U., Carell, T., Cramer, P. |
2007 |
Science |
315 |
859 |
n/a |
1N4E |
Crystal Structure of a DNA Decamer Containing a cis-syn Thymine-dimer |
Park, H., Zhang, K., Ren, Y., Nadji, S., Sinha, N., Taylor, J.-S., Kang, C. |
2002 |
Proc.Natl.Acad.Sci.USA |
99 |
15965 |
12594204 |
1T4I |
Crystal Structure of a DNA Decamer Containing a cis-syn Thymine-dimer |
Park, H., Zhang, K., Ren, Y., Nadji, S., Sinha, N., Taylor, J.S., Kang, C. |
2002 |
Proc.Natl.Acad.Sci.USA |
99 |
15965 |
12456887 |
1SM5 |
Crystal Structure of a DNA Decamer Containing a Thymine-dimer |
Park, H., Zhang, K., Ren, Y., Nadji, S., Sinha, N., Taylor, J.-S., Kang, C. |
2002 |
Proc.Natl.Acad.Sci.USA |
99 |
15965 |
12456887 |
1IQU |
Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism. |
Komori, H., Masui, R., Kuramitsu, S., Yokoyama, S., Shibata, T., Inoue, Y., Miki, K. |
2001 |
Proc.Natl.Acad.Sci.USA |
98 |
13560 |
11707580 |
2BQ3 |
DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. |
Zang, H., Goodenough, A.K., Choi, J.Y., Irimia, A., Loukachevitch, L.V., Kozekov, I.D., Angel, K.C., Rizzo, C.J., Egli, M., Guengerich, F.P. |
2005 |
J.Biol.Chem. |
280 |
29750 |
n/a |
2BQR |
DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. |
Zang, H., Goodenough, A.K., Choi, J.Y., Irimia, A., Loukachevitch, L.V., Kozekov, I.D., Angel, K.C., Rizzo, C.J., Egli, M., Guengerich, F.P. |
2005 |
J.Biol.Chem. |
280 |
29750 |
n/a |
2BQU |
DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. |
Zang, H., Goodenough, A.K., Choi, J.Y., Irimia, A., Loukachevitch, L.V., Kozekov, I.D., Angel, K.C., Rizzo, C.J., Egli, M., Guengerich, F.P. |
2005 |
J.Biol.Chem. |
280 |
29750 |
n/a |
2BR0 |
DNA Adduct Bypass Polymerization by Sulfolobus Solfataricus DNA Polymerase Dpo4: Analysis and Crystal Structures of Multiple Base Pair Substitution and Frameshift Products with the Adduct 1,N2-Ethenoguanine. |
Zang, H., Goodenough, A.K., Choi, J.Y., Irimia, A., Loukachevitch, L.V., Kozekov, I.D., Angel, K.C., Rizzo, C.J., Egli, M., Guengerich, F.P. |
2005 |
J.Biol.Chem. |
280 |
29750 |
n/a |
2C22 |
Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4 |
Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., Guengerich, F.P. |
2006 |
J.Biol.Chem. |
281 |
2358 |
n/a |
2C28 |
Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4 |
Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., P Guengerich, F. |
n/a |
To be Published |
n/a |
n/a |
n/a |
2C2D |
Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4 |
Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., P Guengerich, F. |
n/a |
To be Published |
n/a |
n/a |
n/a |
2C2E |
Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4 |
Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., P Guengerich, F. |
n/a |
To be Published |
n/a |
n/a |
n/a |
2C2R |
Efficient and High Fidelity Incorporation of Dctp Opposite 7,8-Dihydro-8-Oxodeoxyguanosine by Sulfolobus Solfataricus DNA Polymerase Dpo4 |
Zang, H., Irimia, A., Choi, J.-Y., Angel, K.C., Loukachevitch, L.V., Egli, M., Guengerich, F.P. |
2006 |
J.Biol.Chem. |
281 |
2358 |
n/a |
2UVR |
Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4 |
Eoff, R.L., Irimia, A., Angel, K.C., Egli, M., Guengerich, F.P. |
n/a |
To be Published |
n/a |
n/a |
n/a |
2UVU |
Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4 |
Eoff, R.L., Irimia, A., Angel, K.C., Egli, M., Guengerich, F.P. |
n/a |
To be Published |
n/a |
n/a |
n/a |
2UVV |
Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4 |
Eoff, R.L., Irimia, A., Angel, K.C., Egli, M., Guengerich, F.P. |
n/a |
To be Published |
n/a |
n/a |
n/a |
2UVW |
Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4 |
Eoff, R.L., Irimia, A., Angel, K.C., Egli, M., Guengerich, F.P. |
n/a |
To be Published |
n/a |
n/a |
n/a |
2JEF |
Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing. |
Eoff, R.L., Angel, K.C., Egli, M., Guengerich, F.P. |
2007 |
J.Biol.Chem. |
282 |
13573 |
n/a |
2JEG |
Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing. |
Eoff, R.L., Angel, K.C., Egli, M., Guengerich, F.P. |
2007 |
J.Biol.Chem. |
282 |
13573 |
n/a |
2JEI |
Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing. |
Eoff, R.L., Angel, K.C., Egli, M., Guengerich, F.P. |
2007 |
J.Biol.Chem. |
282 |
13573 |
n/a |
2JEJ |
Molecular Basis of Selectivity of Nucleoside Triphosphate Incorporation Opposite O6-Benzylguanine by Sulfolobus Solfataricus DNA Polymerase Dpo4: Steady-State and Pre-Steady-State Kinetics and X-Ray Crystallography of Correct and Incorrect Pairing. |
Eoff, R.L., Angel, K.C., Egli, M., Guengerich, F.P. |
2007 |
J.Biol.Chem. |
282 |
13573 |
n/a |
2J07 |
Natural and Non-Natural Antenna Chromophores in the DNA Photolyase from Thermus Thermophilus |
Klar, T., Kaiser, G., Hennecke, U., Carell, T., Batschauer, A., Essen, L.-O. |
2006 |
Chembiochem |
7 |
1798 |
n/a |
2J08 |
Natural and Non-Natural Antenna Chromophores in the DNA Photolyase from Thermus Thermophilus |
Klar, T., Kaiser, G., Hennecke, U., Carell, T., Batschauer, A., Essen, L.-O. |
2006 |
Chembiochem |
7 |
1798 |
n/a |
2J09 |
Natural and Non-Natural Antenna Chromophores in the DNA Photolyase from Thermus Thermophilus |
Klar, T., Kaiser, G., Hennecke, U., Carell, T., Batschauer, A., Essen, L.-O. |
2006 |
Chembiochem |
7 |
1798 |
n/a |
1SKR |
Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7. |
Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T. |
2004 |
Nat.Struct.Mol.Biol. |
11 |
784 |
15235589 |
1SKS |
Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7. |
Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T. |
2004 |
Nat.Struct.Mol.Biol. |
11 |
784 |
15235589 |
1SKW |
Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7. |
Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T. |
2004 |
Nat.Struct.Mol.Biol. |
11 |
784 |
15235589 |
1SL0 |
Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7. |
Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T. |
2004 |
Nat.Struct.Mol.Biol. |
11 |
784 |
15235589 |
1SL1 |
Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7. |
Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T. |
2004 |
Nat.Struct.Mol.Biol. |
11 |
784 |
15235589 |
1SL2 |
Nucleotide insertion opposite a cis-syn thymine dimer by a replicative DNA polymerase from bacteriophage T7. |
Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T. |
2004 |
Nat.Struct.Mol.Biol. |
11 |
784 |
15235589 |
1RYR |
Replication of a Cis-Syn Thymine Dimer at Atomic Resolution |
Ling, H., Boudsocq, F., Plosky, B., Woodgate, R., Yang, W. |
2003 |
Nature |
424 |
1083 |
12904819 |
1RYS |
Replication of a Cis-Syn Thymine Dimer at Atomic Resolution |
Ling, H., Boudsocq, F., Plosky, B., Woodgate, R., Yang, W. |
2003 |
Nature |
424 |
1083 |
12904819 |
1QL5 |
Solution Structure of a DNA Decamer Duplex Containing the 3' T.T Base Pair of the Cis-Syn Cyclobutane Pyrimidine Dimer: Implication for the Mutagenic Property of the Cis-Syn Dimer. |
Lee, J.-H., -J Choi, Y., Choi, B.-S. |
2000 |
Nucleic Acids Res. |
28 |
1794 |
10734199 |
1COC |
Solution-state structure of a DNA dodecamer duplex containing a Cis-syn thymine cyclobutane dimer, the major UV photoproduct of DNA. |
McAteer, K., Jing, Y., Kao, J., Taylor, J.S., Kennedy, M.A. |
1998 |
J.Mol.Biol. |
282 |
1013 |
9753551 |
1TTD |
Solution-state structure of a DNA dodecamer duplex containing a Cis-syn thymine cyclobutane dimer, the major UV photoproduct of DNA. |
McAteer, K., Jing, Y., Kao, J., Taylor, J.S., Kennedy, M.A. |
1998 |
J.Mol.Biol. |
282 |
1013 |
9753551 |
2BTO |
Structure of Bacterial Tubulin Btuba/B: Evidence for Horizontal Gene Transfer. |
Schlieper, D., Oliva, M.A., Andreu, J.M., Lowe, J. |
2005 |
Proc.Natl.Acad.Sci.USA |
102 |
9170 |
n/a |
2J6S |
Sulfolobus Solfataricus DNA Polymerase Dpo4 is Partially Inhibited by "Wobble" Pairing between O6-Methylguanine and Cytosine, But Accurate Bypass is Preferred. |
Eoff, R.L., Irimia, A., Egli, M., Guengerich, F.P. |
2007 |
J.Biol.Chem. |
282 |
1456 |
n/a |
2J6T |
Sulfolobus Solfataricus DNA Polymerase Dpo4 is Partially Inhibited by "Wobble" Pairing between O6-Methylguanine and Cytosine, But Accurate Bypass is Preferred. |
Eoff, R.L., Irimia, A., Egli, M., Guengerich, F.P. |
2007 |
J.Biol.Chem. |
282 |
1456 |
n/a |
2J6U |
Sulfolobus Solfataricus DNA Polymerase Dpo4 is Partially Inhibited by "Wobble" Pairing between O6-Methylguanine and Cytosine, But Accurate Bypass is Preferred. |
Eoff, R.L., Irimia, A., Egli, M., Guengerich, F.P. |
2007 |
J.Biol.Chem. |
282 |
1456 |
n/a |
1TPT |
Three-dimensional structure of thymidine phosphorylase from Escherichia coli at 2.8 A resolution. |
Walter, M.R., Cook, W.J., Cole, L.B., Short, S.A., Koszalka, G.W., Krenitsky, T.A., Ealick, S.E. |
1990 |
J.Biol.Chem. |
265 |
14016 |
2199449 |
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