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Ubiquitin

PDB ID Authors First Page PubMed ID Journal Name Citation Title Volume No Publication Year
1UZX H.Teo, D.Veprintsev, R.Williams 28689 n/a J.Biol.Chem. Structural Insights Into Endosomal Sorting Complex Required for Transport (Escrt-I) Recognition of Ubiquitinated Proteins 279 2004
1P3Q G.Prag, S.Misra, E.A.Jones, R.Ghirlando, B.A.Davies, B.F.Horazdovsky, J.H.Hurley 609 12787502 Cell (Cambridge,Mass.) Mechanism of Ubiquitin Recognition by the Cue Domain of Vps9P. 113 2003
1UBQ S.Vijay-Kumar, C.E.Bugg, W.J.Cook 531 3041007 J Mol Biol Structure of ubiquitin refined at 1.8 A resolution. 194 1987
1F9J C.L.Phillips, J.Thrower, C.M.Pickart, C.P.Hill 341 11173499 Acta Crystallogr., Sect.D Structure of a New Crystal Form of Tetraubiquitin 57 2001
1TBE W.J.Cook, L.C.Jeffrey, E.Kasperek, C.M.Pickart 601 8107144 J Mol Biol Structure of tetraubiquitin shows how multiubiquitin chains can be formed. 236 1994
1UBI R.Ramage, J.Green, T.W.Muir, O.M.Ogunjobi, S.Love, K.Shaw 151 8166633 Biochem J Synthetic, structural and biological studies of the ubiquitin system: the total chemical synthesis of ubiquitin. 299 1994
1Q5W S.L.Alam, J.Sun, M.Payne, B.D.Welch, B.K.Blake, D.R.Davis, H.H.Meyer, S.D.Emr, W.I.Sundquist 1411 15029239 Embo J. Ubiquitin Interactions of Nzf Zinc Fingers. 23 2004
1D3Z G.Cornilescu, J.L.Marquardt, M.Ottiger, A.Bax 6836 n/a J.Am.Chem.Soc. Validation of Protein Structure from Anisotropic Carbonyl Chemical Shifts in a Dilute Liquid Crystalline Phase 120 1998
1AAR W.J.Cook, L.C.Jeffrey, M.Carson, Z.Chen, C.M.Pickart 16467 1322903 J Biol Chem Structure of a diubiquitin conjugate and a model for interaction with ubiquitin conjugating enzyme (E2). 267 1992
1G6J C.R.Babu, P.F.Flynn, A.J.Wand 2691 11456950 J.Am.Chem.Soc. Validation of Protein Structure from Preparations of Encapsulated Proteins Dissolved in Low Viscosity Fluids 123 2001
1FXT K.S.Hamilton, M.J.Ellison, K.R.Barber, R.S.Williams, J.T.Huzil, S.McKenna, C.Ptak, M.Glover, G.S.Shaw 897 11591345 Structure Structure of a Conjugating Enzyme-Ubiquitin Thiolester Intermediate Reveals a Novel Role for the Ubiquitin Tail 9 2001
1S1Q W.I.Sundquist, H.L.Schubert, B.N.Kelly, G.C.Hill, J.M.Holton, C.P.Hill 783 15053872 Mol. Cell Ubiquitin Recognition by the Human Tsg101 Protein 13 2004
1XD3 S.Misaghi, P.J.Galardy, W.J.N.Meester, H.Ovaa, H.L.Ploegh, R.Gaudet n/a n/a To be Published Structure of the Ubiquitin Hydrolase Uch-L3 Complexed with a Suicide Substrate n/a n/a
1CMX S.C.Johnston, S.M.Riddle, R.E.Cohen, C.P.Hill 3877 10406793 Embo J. Structural Basis for the Specificity of Ubiquitin C-Terminal Hydrolases 18 1999
1NBF M.Hu, P.Li, M.Li, W.Li, T.Yao, J.-W.Wu, W.Gu, R.E.Cohen, Y.Shi 1041 12507430 Cell (Cambridge,Mass.) Crystal Structure of a Ubp-Family Deubiquitinating Enzyme in Isolation and in Complex with Ubiquitin Aldehyde 111 2002
1OGW D.Alexeev, P.N.Barlow, S.M.Bury, J.-D.Charrier, A.Cooper, D.Hadfield, C.Jamieson, S.M.Kelly, R.Layfield, R.J.Mayer, H.Mcsparran, N.C.Price, R.Ramage, L.Sawyer, B.A.Starkmann, D.Uhrin, J.Willken, D.W.Young 894 n/a Chembiochem Synthesis, Structural and Biological Studies of Ubiquitin Mutants Containing (2S, 4S)-5-Fluoroleucine Residues Strategically Placed in the Hydrophobic Core 4 2003
1UD7 E.C.Johnson, G.A.Lazar, J.R.Desjarlais, T.M.Handel 967 10467150 Structure Fold Des Solution structure and dynamics of a designed hydrophobic core variant of ubiquitin. 7 1999
1OTR R.S.Kang, C.M.Daniels, S.A.Francis, S.C.Shih, W.J.Salerno, L.Hicke, I.Radhakrishnan 621 12787503 Cell (Cambridge,Mass.) Solution Structure of a Cue-Ubiquitin Complex Reveals a Conserved Mode of Ubiquitin Binding 113 2003
1Q0W K.A.Swanson, R.S.Kang, S.D.Stamenova, L.Hicke, I.Radhakrishnan 4597 12970172 Embo J. Solution Structure of Vps27 Uim-Ubiquitin Complex Important for Endosomal Sorting and Receptor Downregulation 22 2003
1C3T G.A.Lazar, E.C.Johnson, J.R.Desjarlais, T.M.Handel 2598 10631975 Protein Sci. Rotamer Strain as a Determinant of Protein Structural Specificity 8 1999
1SIF C.G.Benitez-Cardoza, K.Stott, M.Hirshberg, H.M.Went, D.N.Woolfson, S.E.Jackson 5195 15122885 Biochemistry Exploring Sequence/Folding Space: Folding Studies on Multiple Hydrophobic Core Mutants of Ubiquitin 43 2004
1GJZ D.Bolton, P.A.Evans, K.Stott, R.W.Broadhurst 773 11733996 J.Mol.Biol. Structure and Properties of a Dimeric N-Terminal Fragment of Human Ubiquitin. 314 2001
1BT0 C.Rao-Naik, W.delaCruz, J.M.Laplaza, S.Tan, J.Callis, A.J.Fisher 34976 9857029 J Biol Chem The rub family of ubiquitin-like proteins. Crystal structure of Arabidopsis rub1 and expression of multiple rubs in Arabidopsis. 273 1998
1R4N H.Walden, M.S.Podgorski, D.T.Huang, D.W.Miller, R.J.Howard, D.L.Minor Jr., J.M.Holton, B.A.Schulman 1427 n/a Mol. Cell The Structure of the Appbp1-Uba3-Nedd8-ATP Complex Reveals the Basis for Selective Ubiquitin-Like Protein Activation by an E1 12 2003
1NDD F.G.Whitby, G.Xia, C.M.Pickart, C.P.Hill 34983 9857030 J Biol Chem Crystal structure of the human ubiquitin-like protein NEDD8 and interactions with ubiquitin pathway enzymes. 273 1998
1R4M H.Walden, M.S.Podgorski, D.T.Huang, D.W.Miller, R.J.Howard, D.L.Minor Jr., J.M.Holton, B.A.Schulman 1427 n/a Mol. Cell The Structure of the Appbp1-Uba3-Nedd8-ATP Complex Reveals the Basis for Selective Ubiquitin-Like Protein Activation by an E1 12 2003
1MG8 M.Tashiro, S.Okubo, S.Shimotakahara, H.Hatanaka, H.Yasuda, M.Kainosho, S.Yokoyama, H.Shindo 153 12652124 J.Biomol.NMR NMR Structure of Ubiquitin-Like Domain in Parkin: Gene Product of Familial Parkinson'S Disease. 25 2003
1IYF E.Sakata, Y.Yamaguchi, E.Kurimoto, J.Kikuchi, S.Yokoyama, S.Yamada, H.Kawahara, H.Yokosawa, N.Hattori, Y.Mizuno, K.Tanaka, K.Kato 301 12634850 Embo Rep. Parkin Binds the Rpn10 Subunit of 26S Proteasomes Through its Ubiquitin-Like Domain 4 2003
1WH3 N.Tochio, T.Tomizawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama n/a n/a To be Published Solution Structure of C-Terminal Ubiquitin Like Domain of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) n/a n/a
1P1A K.S.Ryu, K.J.Lee, S.H.Bae, B.K.Kim, K.A.Kim, B.S.Choi 36621 12832454 J.Biol.Chem. Binding Surface Mapping of Intra- and Interdomain Interactions Among Hhr23B, Ubiquitin, and Polyubiquitin Binding Site 2 of S5A 278 2003
1UEL K.Fujiwara, T.Tenno, K.Sugasawa, J.G.Jee, I.Ohki, C.Kojima, H.Tochio, H.Hiroaki, F.Hanaoka, M.Shirakawa 4760 14585839 J.Biol.Chem. Structure of the Ubiquitin-Interacting Motif of S5A Bound to the Ubiquitin-Like Domain of Hr23B 279 2004

Last changed by: A.Honegger, 8/4/06