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Glycogen Phosphorylase

PDB ID Authors First Page Journal Name Title Volume No Publication Year
1A8I M.Gregoriou, M.E.Noble, K.A.Watson, E.F.Garman, T.M.Krulle, C.de la Fuente, G.W.Fleet, N.G.Oikonomakos, L.N.Johnson 915 Protein Sci The structure of a glycogen phosphorylase glucopyranose spirohydantoin complex at 1.8 A resolution and 100 K: the role of the water structure and its contribution to binding. 7 1998
1ABB D.D.Leonidas, N.G.Oikonomakos, A.C.Papageorgiou, K.R.Acharya, D.Barford, L.N.Johnson 1112 Protein Sci Control of phosphorylase b conformation by a modified cofactor: crystallographic studies on R-state glycogen phosphorylase reconstituted with pyridoxal 5'-diphosphate. 1 1992
1AXR T.D.Heightman, A.Vasella, K.E.Tsitsanou, S.E.Zographos, V.T.Skamnaki, N.G.Oikonomakos 853 HELVETICA CHIMICA ACTA Cooperative interactions of the catalytic nucleophile and the catalytic acid in the inhibition of beta-glycosidases. Calculations and their validation by comparative kinetic and structural studies of the inhibition of glycogen phosphorylase b. 81 1998
1B4D K.E.Tsitsanou, N.G.Oikonomakos, S.E.Zographos, V.T.Skamnaki, M.Gregoriou, K.A.Watson, L.N.Johnson, G.W.J.Fleet 741 Protein Sci. Effects of Commonly Used Cryoprotectants on Glycogen Phosphorylase Activity and Structure 8 1999
1BX3 K.E.Tsitsanou, N.G.Oikonomakos, S.E.Zographos, V.T.Skamnaki, M.Gregoriou, K.A.Watson, L.N.Johnson, G.W.J.Fleet 741 Protein Sci. Effects of Commonly Used Cryoprotectants on Glycogen Phosphorylase Activity and Structure 8 1999
1C50 N.G.Oikonomakos, V.T.Skamnaki, K.E.Tsitsanou, N.G.Gavalas, L.N.Johnson 575 Structure (London) A New Allosteric Site in Glycogen Phosphorylase B as a Target for Drug Interactions 8 2000
1C8K N.G.Oikonomakos, J.B.Schnier, S.E.Zographos, V.T.Skamnaki, K.E.Tsitsanou, L.N.Johnson 34566 J.Biol.Chem. Flavopiridol Inhibits Glycogen Phosphorylase by Binding at the Inhibitor Site 275 2000
1C8L K.E.Tsitsanou, V.T.Skamnaki, N.G.Oikonomakos n/a To be Published Synergistic Inhibition of Glycogen Phosphorylase a by a Potential Antidiabetic Drug and Caffeine: Kinetic and Crystallographic Studies n/a n/a
1E1Y N.G.Oikonomakos, J.B.Schnier, S.E.Zographos, V.T.Skamnaki, K.E.Tsitsanou, L.N.Johnson 34566 J.Biol.Chem. Flavopiridol Inhibits Glycogen Phosphorylase by Binding at the Inhibitor Site 275 2000
1EM6 V.L.Rath, M.Ammirati, D.E.Danley, J.L.Ekstrom, E.M.Gibbs, T.R.Hynes, A.M.Mathiowetz, R.K.McPherson, T.V.Olson, J.L Treadway, D.J.Hoover 677 Chem.Biol. Human Liver Glycogen Phosphorylase Inhibitors Bind at a New Allosteric Site 7 2000
1EXV V.L.Rath, M.Ammirati, D.E.Danley, J.L.Ekstrom, E.M.Gibbs, T.R.Hynes, A.M.Mathiowetz, R.K.McPherson, T.V.Olson, J.L Treadway, D.J.Hoover 677 Chem.Biol. Human Liver Glycogen Phosphorylase Inhibitors Bind at a New Allosteric Site 7 2000
1FA9 V.L.Rath, M.Ammirati, P.K.Lemotte, K.F.Fennell, M.N.Mansour, D.E.Danley, T.R.Hynes, G.K.Schulte, D.J.Wasilko, J.Pandit 139 Mol. Cell Activation of Human Liver Glycogen Phosphorylase by Alteration of the Secondary Structure and Packing of the Catalytic Core 6 2000
1FC0 V.L.Rath, M.Ammirati, P.K.Lemotte, K.F.Fennell, M.M.Mansour, D.E.Danley, T.R.Hynes, G.K.Schulte, D.J.Wasilko, J.Pandit 139 Mol. Cell Activation of Human Liver Glycogen Phosphorylase by Altering the Secondary Structure and Packing of the Catalytic Core 6 n/a
1FS4 K.A.Watson, K.E.Tsitsanou, M.Gregoriou, S.E.Zographos, V.T.Skamnaki, N.G.Oikonomakos, G.W.Fleet, L.N.Johnson n/a To be Published Structures of Glycogen Phosphorylase-Inhibitor Complexes and the Implications for Structure-Based Drug Design n/a n/a
1FTQ K.A.Watson, K.E.Tsitsanou, M.Gregoriou, S.E.Zographos, V.T.Skamnaki, N.G.Oikonomakos, G.W.Fleet, L.N.Johnson n/a To be Published Structures of Glycogen Phosphorylase-Inhibitor Complexes and the Implications for Structure-Based Drug Design n/a n/a
1FTW K.A.Watson, K.E.Tsitsanou, M.Gregoriou, S.E.Zographos, V.T.Skamnaki, N.G.Oikonomakos, G.W.Fleet, L.N.Johnson n/a To be Published Structures of Glycogen Phosphorylase-Inhibitor Complexes and the Implications for Structure-Based Drug Design n/a n/a
1FTY K.A.Watson, K.E.Tsitsanou, M.Gregoriou, S.E.Zographos, V.T.Skamnaki, N.G.Oikonomakos, G.W.Fleet, L.N.Johnson n/a To be Published Structures of Glycogen Phosphorylase-Inhibitor Complexes and the Implications for Structure-Based Drug Design n/a n/a
1FU4 K.A.Watson, K.E.Tsitsanou, M.Gregoriou, S.E.Zographos, V.T.Skamnaki, N.G.Oikonomakos, G.W.Fleet, L.N.Johnson n/a To be Published Structures of Glycogen Phosphorylase-Inhibitor Complexes and the Implications for Structure-Based Drug Design n/a n/a
1FU7 K.A.Watson, K.E.Tsitsanou, M.Gregoriou, S.E.Zographos, V.T.Skamnaki, N.G.Oikonomakos, G.W.Fleet, L.N.Johnson n/a To be Published Structures of Glycogen Phosphorylase-Inhibitor Complexes and the Implications for Structure-Based Drug Design n/a n/a
1FU8 K.A.Watson, K.E.Tsitsanou, M.Gregoriou, S.E.Zographos, V.T.Skamnaki, N.G.Oikonomakos, G.W.Fleet, L.N.Johnson n/a To be Published Structures of Glycogen Phosphorylase-Inhibitor Complexes and the Implications for Structure-Based Drug Design n/a n/a
1GFZ N.G.Oikonomakos, S.E.Zographos, V.T.Skamnaki, K.E.Tsitsanou, L.N.Johnson n/a To be Published Flavopiridol Inhibits Glycogen Phosphorylase by Binding at the Inhibitor Site n/a n/a
1GG8 K.A.Watson, E.P.Mitchell, L.N.Johnson, J.C.Son, C.J.Bichard, M.G.Orchard, G.W.Fleet, N.G.Oikonomakos, D.D.Leonidas, M.Kontou, A.C.Papageorgiou 5745 Biochemistry Design of Inhibitors of Glycogen Phosphorylase: A Study of Alpha-and Beta-C-Glucosides and 1-Thio-Beta-D-Glucose Compounds. 33 1994
1GGN K.A.Watson, K.E.Tsitsanou, M.Gregoriou, S.E.Zographos, V.T.Skamnaki, N.G.Oikonomakos, G.W.Fleet, L.N.Johnson n/a To be Published Structures of Glycogen Phosphorylase-Inhibitor Complexes and the Implications for Structure-Based Drug Design n/a n/a
1GPA D.Barford, S.H.Hu, L.N.Johnson 233 J Mol Biol Structural mechanism for glycogen phosphorylase control by phosphorylation and AMP. 218 1991
1GPB K.R.Acharya, D.I.Stuart, K.M.Varvill, L.N.Johnson 1 Glycogen Phosphorylase B: Description of the Protein Structure Glycogen Phosphorylase B: Description of the Protein Structure n/a 1991
1GPY L.N.Johnson, P.Snape, J.L.Martin, K.R.Acharya, D.Barford, N.G.Oikonomakos 253 J Mol Biol Crystallographic binding studies on the allosteric inhibitor glucose-6-phosphate to T state glycogen phosphorylase b. 232 1993
1H5U N.G.Oikonomakos, S.E.Zographos, V.T.Skamnaki, G.Archontis n/a To be Published The 1.76 A Resolution Crystal Structure of Glycogen Phosphorylase B Complexed with Glucose and Cp320626, a Potential Antidiabetic Drug n/a n/a
1HLF N.G.Oikonomakos, V.T.Skamnaki, T.Dosca, B.Toth, P.Gergely, E.Osz, L.Szilagyi, L.Somsak n/a To be Published Binding of Glucopyranosylidene-Spiro-Thiohydantoin to Glycogen Phosphorylase B: Kinetic and Crystallographic Studies n/a n/a
1K06 N.G.Oikonomakos, M.Kosmopoulou, S.E.Zographos, D.D.Leonidas, L.Somsak, V.Nagy, J.P.Praly, T.Dosca, B.Toth, P.Gergely n/a To be Published The Binding of N-Acetyl-and N-Benzoyl-N'-Beta-D-Glucopyranosyl Ureas to Glycogen Phosphorylase B: Kinetic and Crystallographic Studies n/a n/a
1K08 N.G.Oikonomakos, M.Kosmopoulou, S.E.Zographos, D.D.Leonidas, L.Somsak, V.Nagy, J.P.Praly, T.Dosca, B.Toth, P.Gergely n/a To be Published The Binding of N-Acetyl-and N-Benzoyl-N'-Beta-D-Glucopyranosyl Ureas to Glycogen Phosphorylase B: Kinetic and Crystallographic Studies n/a n/a
1K0Q N.G.Oikonomakos, M.Kosmopoulou, S.E.Zographos, D.D.Leonidas, L.Somsak, V.Nagy, J.P.Praly, T.Dosca, B.Toth, P.Gergely n/a To be Published The Binding of N-Acetyl-and N-Benzoyl-N'-Beta-D-Glucopyranosyl Ureas to Glycogen Phosphorylase B: Kinetic and Crystallographic Studies n/a n/a
1NOI E.P.Mitchell, S.G.Withers, P.Ermert, A.T.Vasella, E.F.Garman, N.G.Oikonomakos, L.N.Johnson 7341 Biochemistry Ternary complex crystal structures of glycogen phosphorylase with the transition state analogue nojirimycin tetrazole and phosphate in the T and R states. 35 1996
1NOJ E.P.Mitchell, S.G.Withers, P.Ermert, A.T.Vasella, E.F.Garman, N.G.Oikonomakos, L.N.Johnson 7341 Biochemistry Ternary complex crystal structures of glycogen phosphorylase with the transition state analogue nojirimycin tetrazole and phosphate in the T and R states. 35 1996
1NOK E.P.Mitchell, S.G.Withers, P.Ermert, A.T.Vasella, E.F.Garman, N.G.Oikonomakos, L.N.Johnson 7341 Biochemistry Ternary complex crystal structures of glycogen phosphorylase with the transition state analogue nojirimycin tetrazole and phosphate in the T and R states. 35 1996
1PYG S.R.Sprang, S.G.Withers, E.J.Goldsmith, R.J.Fletterick, N.B.Madsen 1367 Science Structural basis for the activation of glycogen phosphorylase b by adenosine monophosphate. 254 1991
1YGP K.Lin, V.L.Rath, S.C.Dai, R.J.Fletterick, P.K.Hwang 1539 Science A protein phosphorylation switch at the conserved allosteric site in GP. 273 1996
2AMV S.E.Zographos, N.G.Oikonomakos, K.E.Tsitsanou, D.D.Leonidas, E.D.Chrysina, V.T.Skamnaki, H.Bischoff, S.Goldmann, K.A.Watson, L.N.Johnson 1413 Structure The structure of glycogen phosphorylase b with an alkyldihydropyridine-dicarboxylic acid compound, a novel and potent inhibitor. 5 1997
2ECP M.O'Reilly, K.A.Watson, L.N.Johnson 5337 Biochemistry The Crystal Structure of the Escherichia Coli Maltodextrin Phosphorylase- Acarbose Complex 38 1999
2GPA N.G.Oikonomakos, K.E.Tsitsanou, S.E.Zographos, V.T.Skamnaki, S.Goldmann, H.Bischoff 1930 Protein Sci. Allosteric Inhibition of Glycogen Phosphorylase a by the Potential Antidiabetic Drug 3-Isopropyl 4-(2-Chlorophenyl)-1,4-Dihydro-1-Ethyl-2-Methyl- Pyridin-3,5,6-Tricarboxylate 8 1999
2GPB J.L.Martin, L.N.Johnson, S.G.Withers 10745 Biochemistry Comparison of the binding of glucose and glucose 1-phosphate derivatives to T-state glycogen phosphorylase b. 29 1990
2GPN M.Gregoriou, M.E.Noble, K.A.Watson, E.F.Garman, T.M.Krulle, C.de la Fuente, G.W.Fleet, N.G.Oikonomakos, L.N.Johnson 915 Protein Sci The structure of a glycogen phosphorylase glucopyranose spirohydantoin complex at 1.8 A resolution and 100 K: the role of the water structure and its contribution to binding. 7 1998
2PRI N.G.Oikonomakos, S.E.Zographos, L.N.Johnson, A.C.Papageorgiou, K.R.Acharya 900 J.Mol.Biol. The Binding of 2-Deoxy-Glucose-6-Phosphate to Glycogen Phosphorylase B: Kinetic and Crystallographic Studies 254 1995
2PRJ N.G.Oikonomakos, M.Kontou, S.E.Zographos, K.A.Watson, L.N.Johnson, C.J.Bichard, G.W.Fleet, K.R.Acharya 2469 Protein Sci N-acetyl-beta-D-glucopyranosylamine: a potent T-state inhibitor of glycogen phosphorylase. A comparison with alpha-D-glucose. 4 1995
2SKC N.G.Oikonomakos, S.E.Zographos, K.E.Tsitsanou, L.N.Johnson, K.R.Acharya 2416 Protein Sci Activator anion binding site in pyridoxal phosphorylase b: the binding of phosphite, phosphate, and fluorophosphate in the crystal. 5 1996
2SKD N.G.Oikonomakos, S.E.Zographos, K.E.Tsitsanou, L.N.Johnson, K.R.Acharya 2416 Protein Sci Activator anion binding site in pyridoxal phosphorylase b: the binding of phosphite, phosphate, and fluorophosphate in the crystal. 5 1996
2SKE N.G.Oikonomakos, S.E.Zographos, K.E.Tsitsanou, L.N.Johnson, K.R.Acharya 2416 Protein Sci Activator anion binding site in pyridoxal phosphorylase b: the binding of phosphite, phosphate, and fluorophosphate in the crystal. 5 1996
3AMV N.G.Oikonomakos, K.E.Tsitsanou, S.E.Zographos, V.T.Skamnaki, S.Goldmann, H.Bischoff 1930 Protein Sci. Allosteric Inhibition of Glycogen Phosphorylase a by the Potential Antidiabetic Drug 3-Isopropyl 4-(2-Chlorophenyl)-1,4-Dihydro-1-Ethyl-2-Methyl- Pyridine-3,5,6-Tricarboxylate. 8 1999
3GPB J.L.Martin, L.N.Johnson, S.G.Withers 10745 Biochemistry Comparison of the binding of glucose and glucose 1-phosphate derivatives to T-state glycogen phosphorylase b. 29 1990
4GPB J.L.Martin, L.N.Johnson, S.G.Withers 10745 Biochemistry Comparison of the binding of glucose and glucose 1-phosphate derivatives to T-state glycogen phosphorylase b. 29 1990
5GPB J.L.Martin, L.N.Johnson, S.G.Withers 10745 Biochemistry Comparison of the binding of glucose and glucose 1-phosphate derivatives to T-state glycogen phosphorylase b. 29 1990
6GPB L.N.Johnson, K.R.Acharya, M.D.Jordan, P.J.McLaughlin 645 J Mol Biol Refined crystal structure of the phosphorylase-heptulose 2-phosphate-oligosaccharide-AMP complex. 211 1990
7GPB D.Barford, S.H.Hu, L.N.Johnson 233 J Mol Biol Structural mechanism for glycogen phosphorylase control by phosphorylation and AMP. 218 1991
8GPB D.Barford, S.H.Hu, L.N.Johnson 233 J Mol Biol Structural mechanism for glycogen phosphorylase control by phosphorylation and AMP. 218 1991
9GPB D.Barford, L.N.Johnson 609 Nature The allosteric transition of glycogen phosphorylase. 340 1989

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PDB Molecule of the Month December 2001, by David S. Goodsell

Last changed by: A.Honegger, 8/4/06