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DNA
PDB ID Authors First Page Journal Name Title Volume No Publication Year
101D D.S.Goodsell, M.L.Kopka, R.E.Dickerson 4983 Biochemistry Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation. 34 1995
102D C.M.Nunn, S.Neidle 2317 J Med Chem Sequence-dependent drug binding to the minor groove of DNA: crystal structure of the DNA dodecamer d(CGCAAATTTGCG)2 complexed with propamidine. 38 1995
103D S.H.Chou, L.Zhu, B.R.Reid 259 J Mol Biol The unusual structure of the human centromere (GGA)2 motif. Unpaired guanosine residues stacked between sheared G.A pairs. 244 1994
105D J.L.Leroy, M.Gueron 101 Structure Solution structures of the i-motif tetramers of d(TCC), d(5methylCCT) and d(T5methylCC): novel NOE connections between amino protons and sugar protons. 3 1995
106D J.L.Leroy, M.Gueron 101 Structure Solution structures of the i-motif tetramers of d(TCC), d(5methylCCT) and d(T5methylCC): novel NOE connections between amino protons and sugar protons. 3 1995
107D C.H.Lin, D.J.Patel 162 J Mol Biol Solution structure of the covalent duocarmycin A-DNA duplex complex. 248 1995
108D H.P.Spielmann, D.E.Wemmer, J.P.Jacobsen 8542 Biochemistry Solution structure of a DNA complex with the fluorescent bis- intercalator TOTO determined by NMR spectroscopy. 34 1995
109D A.Czarny, D.W.Boykin, A.A.Wood, C.M.Nunn, S.Neidle, M.Zhao, W.D.Wilson 4716 J Am Chem Soc ANALYSIS OF VAN-DER-WAALS AND ELECTROSTATIC CONTRIBUTIONS IN THE INTERACTIONS OF MINOR-GROOVE BINDING BENZIMIDAZOLES WITH DNA. 117 1995
110D G.A.Leonard, T.W.Hambley, K.Mcauleyhecht, T.Brown, W.N.Hunter 458 Acta Crystallogr D Biol Crystallogr ANTHRACYCLINE DNA INTERACTIONS AT UNFAVORABLE BASE-PAIR TRIPLET-BINDING SITES - STRUCTURES OF D(CGGCCG) DAUNOMYCIN AND D(TGGCCA) ADRIAMYCIN COMPLEXES. 49 1993
111D T.Brown, G.A.Leonard, E.D.Booth, J.Chambers 455 J Mol Biol Crystal structure and stability of a DNA duplex containing A(anti).G(syn) base-pairs. 207 1989
112D T.Brown, W.N.Hunter, G.Kneale, O.Kennard 2402 Proc Natl Acad Sci U S A Molecular structure of the G.A base pair in DNA and its implications for the mechanism of transversion mutations. 83 1986
113D W.N.Hunter, T.Brown, G.Kneale, N.N.Anand, D.Rabinovich, O.Kennard 9962 J Biol Chem The structure of guanosine-thymidine mismatches in B-DNA at 2.5-A resolution. 262 1987
114D P.W.Corfield, W.N.Hunter, T.Brown, P.Robinson, O.Kennard 7935 Nucleic Acids Res Inosine.adenine base pairs in a B-DNA duplex. 15 1987
115D O.Kennard, W.B.Cruse, J.Nachman, T.Prange, Z.Shakked, D.Rabinovich 623 J Biomol Struct Dyn Ordered water structure in an A-DNA octamer at 1.7 A resolution. 3 1986
116D C.A.Bingman, G.Zon, M.Sundaralingam 738 J Mol Biol Crystal and molecular structure of the A-DNA dodecamer d(CCGTACGTACGG). Choice of fragment helical axis. 227 1992
117D C.Bingman, S.Jain, G.Zon, M.Sundaralingam 6637 Nucleic Acids Res Crystal and molecular structure of the alternating dodecamer d(GCGTACGTACGC) in the A-DNA form: comparison with the isomorphous non-alternating dodecamer d(CCGTACGTACGG). 20 1992
118D C.Bingman, X.Li, G.Zon, M.Sundaralingam 12803 Biochemistry Crystal and molecular structure of d(GTGCGCAC): investigation of the effects of base sequence on the conformation of octamer duplexes. 31 1992
119D G.A.Leonard, W.N.Hunter 198 J Mol Biol Crystal and molecular structure of d(CGTAGATCTACG) at 2.25 A resolution. 234 1993
121D L.Tabernero, N.Verdaguer, M.Coll, I.Fita, G.A.van der Marel, J.H.van Boom, A.Rich, J.Aymami 8403 Biochemistry Molecular structure of the A-tract DNA dodecamer d(CGCAAATTTGCG) complexed with the minor groove binding drug netropsin. 32 1993
122D M.Hahn, U.Heinemann 468 Acta Crystallogr D Biol Crystallogr DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM - COMPARISON OF MODELS FOR D(CCAGGCM(5)CTGG) DERIVED FROM NUCLSQ, TNT AND X-PLOR. 49 1993
123D M.Hahn, U.Heinemann 468 Acta Crystallogr D Biol Crystallogr DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM - COMPARISON OF MODELS FOR D(CCAGGCM(5)CTGG) DERIVED FROM NUCLSQ, TNT AND X-PLOR. 49 1993
126D D.S.Goodsell, M.L.Kopka, D.Cascio, R.E.Dickerson 2930 Proc Natl Acad Sci U S A Crystal structure of CATGGCCATG and its implications for A-tract bending models. 90 1993
127D M.Sriram, G.A.van der Marel, H.L.Roelen, J.H.van Boom, A.H.Wang 225 EMBO J Conformation of B-DNA containing O6-ethyl-G-C base pairs stabilized by minor groove binding drugs: molecular structure of d(CGC[e6G]AATTCGCG complexed with Hoechst 33258 or Hoechst 33342. 11 1992
128D M.Sriram, G.A.van der Marel, H.L.Roelen, J.H.van Boom, A.H.Wang 225 EMBO J Conformation of B-DNA containing O6-ethyl-G-C base pairs stabilized by minor groove binding drugs: molecular structure of d(CGC[e6G]AATTCGCG complexed with Hoechst 33258 or Hoechst 33342. 11 1992
129D M.Sriram, G.A.van der Marel, H.L.Roelen, J.H.van Boom, A.H.Wang 225 EMBO J Conformation of B-DNA containing O6-ethyl-G-C base pairs stabilized by minor groove binding drugs: molecular structure of d(CGC[e6G]AATTCGCG complexed with Hoechst 33258 or Hoechst 33342. 11 1992
130D M.Sriram, G.A.van der Marel, H.L.Roelen, J.H.van Boom, A.H.Wang 225 EMBO J Conformation of B-DNA containing O6-ethyl-G-C base pairs stabilized by minor groove binding drugs: molecular structure of d(CGC[e6G]AATTCGCG complexed with Hoechst 33258 or Hoechst 33342. 11 1992
131D D.Bancroft, L.D.Williams, A.Rich, M.Egli 1073 Biochemistry The low-temperature crystal structure of the pure-spermine form of Z-DNA reveals binding of a spermine molecule in the minor groove. 33 1994
132D S.G.Kim, B.R.Reid 12103 Biochemistry Solution structure of the TnAn DNA duplex GCCGTTAACGCG containing the HpaI restriction site. 31 1992
133D A.R.Cervi, A.Guy, G.A.Leonard, R.Teoule, W.N.Hunter 5623 Nucleic Acids Res The crystal structure of N4-methylcytosine.guanosine base-pairs in the synthetic hexanucleotide d(CGCGm4CG). 21 1993
134D I.Radhakrishnan, D.J.Patel 135 Structure Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples. 1 1993
135D I.Radhakrishnan, D.J.Patel 135 Structure Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples. 1 1993
136D I.Radhakrishnan, D.J.Patel 135 Structure Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples. 1 1993
137D B.Ramakrishnan, M.Sundaralingam 11458 Biochemistry Evidence for crystal environment dominating base sequence effects on DNA conformation: crystal structures of the orthorhombic and hexagonal polymorphs of the A-DNA decamer d(GCGGGCCCGC) and comparison with their isomorphous crystal structures. 32 1993
138D B.Ramakrishnan, M.Sundaralingam 11458 Biochemistry Evidence for crystal environment dominating base sequence effects on DNA conformation: crystal structures of the orthorhombic and hexagonal polymorphs of the A-DNA decamer d(GCGGGCCCGC) and comparison with their isomorphous crystal structures. 32 1993
139D Y.Wang, D.J.Patel 1171 J Mol Biol Solution structure of a parallel-stranded G-quadruplex DNA. 234 1993
140D A.Mujeeb, S.M.Kerwin, G.L.Kenyon, T.L.James 13419 Biochemistry Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra. 32 1993
141D A.Mujeeb, S.M.Kerwin, G.L.Kenyon, T.L.James 13419 Biochemistry Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra. 32 1993
142D A.Mujeeb, S.M.Kerwin, G.L.Kenyon, T.L.James 13419 Biochemistry Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra. 32 1993
143D Y.Wang, D.J.Patel 263 Structure Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex. 1 1993
144D Y.G.Gao, M.Sriram, W.A.Denny, A.H.Wang 9639 Biochemistry Minor groove binding of SN6999 to an alkylated DNA: molecular structure of d(CGC[e6G]AATTCGCG)-SN6999 complex. 32 1993
145D G.P.Schroth, T.F.Kagawa, P.S.Ho 13381 Biochemistry Structure and thermodynamics of nonalternating C.G base pairs in Z-DNA: the 1.3-A crystal structure of the asymmetric hexanucleotide d(m5CGGGm5CG).d(m5CGCCm5CG). 32 1993
146D M.Sastry, D.J.Patel 6588 Biochemistry Solution structure of the mithramycin dimer-DNA complex. 32 1993
148D P.Schultze, R.F.Macaya, J.Feigon 1532 J Mol Biol Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG). 235 1994
149D I.Radhakrishnan, D.J.Patel 17 Structure Solution structure of a pyrimidine.purine.pyrimidine DNA triplex containing T.AT, C+.GC and G.TA triples. 2 1994
150D G.A.Leonard, K.E.McAuley-Hecht, N.J.Gibson, T.Brown, W.P.Watson, W.N.Hunter 4755 Biochemistry Guanine-1,N6-ethenoadenine base pairs in the crystal structure of d(CGCGAATT(epsilon dA)GCG). 33 1994
151D L.A.Lipscomb, M.E.Peek, F.X.Zhou, J.A.Bertrand, D.VanDerveer, L.D.Williams 3649 Biochemistry Water ring structure at DNA interfaces: hydration and dynamics of DNA- anthracycline complexes. 33 1994
152D L.A.Lipscomb, M.E.Peek, F.X.Zhou, J.A.Bertrand, D.VanDerveer, L.D.Williams 3649 Biochemistry Water ring structure at DNA interfaces: hydration and dynamics of DNA- anthracycline complexes. 33 1994
153D S.L.Ginell, J.Vojtechovsky, B.Gaffney, R.Jones, H.M.Berman 3487 Biochemistry Crystal structure of a mispaired dodecamer, d(CGAGAATTC(O6Me)GCG)2, containing a carcinogenic O6-methylguanine. 33 1994
154D M.E.Peek, L.A.Lipscomb, J.A.Bertrand, Q.Gao, B.P.Roques, C.Garbay-Jaureguiberry, L.D.Williams 3794 Biochemistry DNA distortion in bis-intercalated complexes. 33 1994
156D P.Schultze, F.W.Smith, J.Feigon 221 Structure Refined solution structure of the dimeric quadruplex formed from the Oxytricha telomeric oligonucleotide d(GGGGTTTTGGGG). 2 1994
158D K.Grzeskowiak, D.S.Goodsell, M.Kaczor-Grzeskowiak, D.Cascio, R.E.Dickerson 8923 Biochemistry Crystallographic analysis of C-C-A-A-G-C-T-T-G-G and its implications for bending in B-DNA. 32 1993
159D X.Chen, B.Ramakrishnan, S.T.Rao, M.Sundaralingam 169 Nat Struct Biol Binding of two distamycin A molecules in the minor groove of an alternating B-DNA duplex. 1 1994
160D B.Ramakrishnan, M.Sundaralingam 431 J Mol Biol High resolution crystal structure of the A-DNA decamer d(CCCGGCCGGG). Novel intermolecular base-paired G*(G.C) triplets. 231 1993
166D C.M.Nunn, T.C.Jenkins, S.Neidle 953 Eur J Biochem Crystal structure of gamma-oxapentamidine complexed with d(CGCGAATTCGCG)2. The effects of drug structural change on DNA minor-groove recognition. 226 1994
167D D.S.Goodsell, M.Kaczor-Grzeskowiak, R.E.Dickerson 79 J Mol Biol The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps. 239 1994
171D B.I.Schweitzer, T.Mikita, G.W.Kellogg, K.H.Gardner, G.P.Beardsley 11460 Biochemistry Solution structure of a DNA dodecamer containing the anti-neoplastic agent arabinosylcytosine: combined use of NMR, restrained molecular dynamics, and full relaxation matrix refinement. 33 1994
172D S.Kamitori, F.Takusagawa 4154 J Am Chem Soc MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN-D - X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)(2)-ACTINOMYCIN-D COMPLEXES AND ITS HOST DNA. 116 1994
173D S.Kamitori, F.Takusagawa 4154 J Am Chem Soc MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN-D - X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)(2)-ACTINOMYCIN-D COMPLEXES AND ITS HOST DNA. 116 1994
175D S.H.Chou, J.W.Cheng, O.Fedoroff, B.R.Reid 467 J Mol Biol DNA sequence GCGAATGAGC containing the human centromere core sequence GAAT forms a self-complementary duplex with sheared G.A pairs in solution. 241 1994
177D I.Radhakrishnan, D.J.Patel 600 J Mol Biol Solution structure and hydration patterns of a pyrimidine.purine.pyrimidine DNA triplex containing a novel T.CG base-triple. 241 1994
178D K.E.McAuley-Hecht, G.A.Leonard, N.J.Gibson, J.B.Thomson, W.P.Watson, W.N.Hunter, T.Brown 10266 Biochemistry Crystal structure of a DNA duplex containing 8-hydroxydeoxyguanine-adenine base pairs. 33 1994
179D Y.Wang, D.J.Patel 508 J Mol Biol Solution structure of the d(T-C-G-A) duplex at acidic pH. A parallel- stranded helix containing C+ .C, G.G and A.A pairs. 242 1994
180D C.Sadasivan, N.Gautham 918 J Mol Biol Sequence-dependent microheterogeneity of Z-DNA: the crystal and molecular structures of d(CACGCG).d(CGCGTG) and d(CGCACG).d(CGTGCG). 248 1995
181D C.Sadasivan, N.Gautham 918 J Mol Biol Sequence-dependent microheterogeneity of Z-DNA: the crystal and molecular structures of d(CACGCG).d(CGCGTG) and d(CGCACG).d(CGTGCG). 248 1995
182D C.K.Smith, G.J.Davies, E.J.Dodson, M.H.Moore 415 Biochemistry DNA-nogalamycin interactions: the crystal structure of d(TGATCA) complexed with nogalamycin. 34 1995
183D L.A.Lipscomb, M.E.Peek, M.L.Morningstar, S.M.Verghis, E.M.Miller, A.Rich, J.M.Essigmann, L.D.Williams 719 Proc Natl Acad Sci U S A X-ray structure of a DNA decamer containing 7,8-dihydro-8-oxoguanine. 92 1995
184D G.A.Leonard, S.Zhang, M.R.Peterson, S.J.Harrop, J.R.Helliwell, W.B.Cruse, B.L.d'Estaintot, O.Kennard, T.Brown, W.N.Hunter 335 Structure Self-association of a DNA loop creates a quadruplex: crystal structure of d(GCATGCT) at 1.8 A resolution. 3 1995
186D Y.Wang, D.J.Patel 1141 Structure Solution structure of the Tetrahymena telomeric repeat d(T2G4)4 G-tetraplex. 2 1994
187D M.Eisenstein, Z.Shakked 662 J Mol Biol Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition. 248 1995
188D M.Eisenstein, Z.Shakked 662 J Mol Biol Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition. 248 1995
189D M.Eisenstein, Z.Shakked 662 J Mol Biol Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition. 248 1995
190D L.Chen, L.Cai, X.Zhang, A.Rich 13540 Biochemistry Crystal structure of a four-stranded intercalated DNA: d(C4). 33 1994
191D C.H.Kang, I.Berger, C.Lockshin, R.Ratliff, R.Moyzis, A.Rich 11636 Proc Natl Acad Sci U S A Crystal structure of intercalated four-stranded d(C3T) at 1.4 A resolution. 91 1994
192D L.Malinina, L.Urpi, X.Salas, T.Huynh-Dinh, J.A.Subirana 484 J Mol Biol Recombination-like structure of d(CCGCGG). 243 1994
194D K.Balendiran, S.T.Rao, C.Y.Sekharudu, G.Zon, M.Sundaralingam 190 Acta Crystallogr D Biol Crystallogr X-RAY STRUCTURES OF THE B-DNA DODECAMER D(CGCGTTAACGCG) WITH AN INVERTED CENTRAL TETRANUCLEOTIDE AND ITS NETROPSIN COMPLEX. 51 1995
195D K.Balendiran, S.T.Rao, C.Y.Sekharudu, G.Zon, M.Sundaralingam 190 Acta Crystallogr D Biol Crystallogr X-RAY STRUCTURES OF THE B-DNA DODECAMER D(CGCGTTAACGCG) WITH AN INVERTED CENTRAL TETRANUCLEOTIDE AND ITS NETROPSIN COMPLEX. 51 1995
196D D.S.Goodsell, K.Grzeskowiak, R.E.Dickerson 1022 Biochemistry Crystal structure of C-T-C-T-C-G-A-G-A-G. Implications for the structure of the Holliday junction. 34 1995
197D B.Langlois d'Estaintot, A.Dautant, C.Courseille, G.Precigoux 673 Eur J Biochem Orthorhombic crystal structure of the A-DNA octamer d(GTACGTAC). Comparison with the tetragonal structure. 213 1993
198D A.Dautant, B.Langlois d'Estaintot, B.Gallois, T.Brown, W.N.Hunter 1710 Nucleic Acids Res A trigonal form of the idarubicin:d(CGATCG) complex; crystal and molecular structure at 2.0 A resolution. 23 1995
199D M.Sastry, R.Fiala, R.Lipman, M.Tomasz, D.J.Patel 338 J Mol Biol Solution structure of the monoalkylated mitomycin C-DNA complex. 247 1995
1A6H A.Kettani, R.A.Kumar, D.J.Patel 638 J Mol Biol Solution structure of a DNA quadruplex containing the fragile X syndrome triplet repeat. 254 1995
1A83 X.Han, J.L.Leroy, M.Gueron 949 J Mol Biol An intramolecular i-motif: the solution structure and base-pair opening kinetics of d(5mCCT3CCT3ACCT3CC). 278 1998
1A84 A.Gelasco, S.J.Lippard 9230 Biochemistry NMR solution structure of a DNA dodecamer duplex containing a cis-diammineplatinum(II) d(GpG) intrastrand cross-link, the major adduct of the anticancer drug cisplatin. 37 1998
1A8N A.Kettani, S.Bouaziz, A.Gorin, H.Zhao, R.A.Jones, D.J.Patel 619 J Mol Biol Solution structure of a Na cation stabilized DNA quadruplex containing G.G.G.G and G.C.G.C tetrads formed by G-G-G-C repeats observed in adeno-associated viral DNA. 282 1998
1A8W S.Bouaziz, A.Kettani, D.J.Patel 637 J Mol Biol A K cation-induced conformational switch within a loop spanning segment of a DNA quadruplex containing G-G-G-C repeats. 282 1998
1A9G R.D.Beger, P.H.Bolton 15565 J Biol Chem Structures of apurinic and apyrimidinic sites in duplex DNAs. 273 1998
1A9H R.D.Beger, P.H.Bolton 15565 J Biol Chem Structures of apurinic and apyrimidinic sites in duplex DNAs. 273 1998
1A9I R.D.Beger, P.H.Bolton 15565 J Biol Chem Structures of apurinic and apyrimidinic sites in duplex DNAs. 273 1998
1A9J R.D.Beger, P.H.Bolton 15565 J Biol Chem Structures of apurinic and apyrimidinic sites in duplex DNAs. 273 1998
1AC7 M.J.van Dongen, M.M.Mooren, E.F.Willems, G.A.van der Marel, J.H.van Boom, S.S.Wijmenga, C.W.Hilbers 1537 Nucleic Acids Res Structural features of the DNA hairpin d(ATCCTA-GTTA-TAGGAT): formation of a G-A base pair in the loop. 25 1997
1AC9 M.Foti, S.Marshalko, E.Schurter, S.Kumar, G.P.Beardsley, B.I.Schweitzer 5336 Biochemistry Solution structure of a DNA decamer containing the antiviral drug ganciclovir: combined use of NMR, restrained molecular dynamics, and full relaxation matrix refinement. 36 1997
1AF1 I.S.Zegar, F.R.Setayesh, B.L.DeCorte, C.M.Harris, T.M.Harris, M.P.Stone 4334 Biochemistry Styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 12 sequence: structural refinement of the minor groove R(12,2)- and S(12,2)-alpha-(N2-guanyl) stereoisomers from 1H NMR. 35 1996
1AFF A.Kettani, S.Bouaziz, W.Wang, R.A.Jones, D.J.Patel 382 Nat Struct Biol Bombyx mori single repeat telomeric DNA sequence forms a G-quadruplex capped by base triads. 4 1997
1AFZ I.S.Zegar, M.P.Stone 114 Chem Res Toxicol Solution structure of an oligodeoxynucleotide containing the human N-ras codon 12 sequence refined from 1H NMR using molecular dynamics restrained by nuclear Overhauser effects. 9 1996
1AG3 J.P.Weisenseel, J.G.Moe, G.R.Reddy, L.J.Marnett, M.P.Stone 50 Biochemistry Structure of a duplex oligodeoxynucleotide containing propanodeoxyguanosine opposite a two-base deletion in the (CpG)3 frame shift hotspot of Salmonella typhimurium hisD3052 determined by 1H NMR and restrained molecular dynamics. 34 1995
1AG5 D.S.Johnston, M.P.Stone 14037 Biochemistry Refined solution structure of 8,9-dihydro-8-(N7-guanyl)-9-hydroxyaflatoxin B1 opposite CpA in the complementary strand of an oligodeoxynucleotide duplex as determined by 1H NMR. 34 1995
1AGH B.Feng, M.P.Stone 821 Chem Res Toxicol Solution structure of an oligodeoxynucleotide containing the human n-ras codon 61 sequence refined from 1H NMR using molecular dynamics restrained by nuclear Overhauser effects. 8 1995
1AGK B.Feng, L.Zhou, M.Passarelli, C.M.Harris, T.M.Harris, M.P.Stone 14021 Biochemistry Major groove (R)-alpha-(N6-adenyl)styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 61 sequence: conformations of the R(61,2) and R(61,3) sequence isomers from 1H NMR. 34 1995
1AGL G.G.Hu, X.Shui, F.Leng, W.Priebe, J.B.Chaires, L.D.Williams 5940 Biochemistry Structure of a DNA-bisdaunomycin complex. 36 1997
1AGO B.Feng, M.Voehler, L.Zhou, M.Passarelli, C.M.Harris, T.M.Harris, M.P.Stone 7316 Biochemistry Major groove (S)-alpha-(N6-adenyl)styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 61 sequence: conformations of the S(61,2) and S(61,3) sequence isomers from 1H NMR. 35 1996
1AGU I.S.Zegar, S.J.Kim, T.N.Johansen, P.J.Horton, C.M.Harris, T.M.Harris, M.P.Stone 6212 Biochemistry Adduction of the human N-ras codon 61 sequence with (-)-(7S,8R,9R,10S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a] pyrene: structural refinement of the intercalated SRSR(61,2) (-)-(7S,8R,9S,10R)-N6-[10-(7,8,9,10- tetrahydrobenzo[a]pyrenyl)]-2'-deoxyadenosyl adduct from 1H NMR. 35 1996
1AGZ B.Feng, L.Zhou, M.Passarelli, C.M.Harris, T.M.Harris, M.P.Stone 14021 Biochemistry Major groove (R)-alpha-(N6-adenyl)styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 61 sequence: conformations of the R(61,2) and R(61,3) sequence isomers from 1H NMR. 34 1995
1AIO P.M.Takahara, A.C.Rosenzweig, C.A.Frederick, S.J.Lippard 649 Nature Crystal structure of double-stranded DNA containing the major adduct of the anticancer drug cisplatin. 377 1995
1AL9 H.Robinson, W.Priebe, J.B.Chaires, A.H.Wang 8663 Biochemistry Binding of two novel bisdaunorubicins to DNA studied by NMR spectroscopy. 36 1997
1AMD H.Robinson, W.Priebe, J.B.Chaires, A.H.Wang 8663 Biochemistry Binding of two novel bisdaunorubicins to DNA studied by NMR spectroscopy. 36 1997
1ANA B.N.Conner, C.Yoon, J.L.Dickerson, R.E.Dickerson 663 J Mol Biol Helix geometry and hydration in an A-DNA tetramer: IC-C-G-G. 174 1984
1AO1 J.Caceres-Cortes, H.Sugiyama, K.Ikudome, I.Saito, A.H.Wang 9995 Biochemistry Interactions of deglycosylated cobalt(III)-pepleomycin (green form) with DNA based on NMR structural studies,. 36 1997
1AO9 J.P.Bartley, T.Brown, A.N.Lane 14502 Biochemistry Solution conformation of an intramolecular DNA triplex containing a nonnucleotide linker: comparison with the DNA duplex. 36 1997
1AP1 F.R.Setayesh, B.L.DeCorte, P.Horton, C.M.Harris, T.M.Harris, M.P.Stone 766 Chem Res Toxicol Styrene oxide adducts in an oligodeoxynucleotide containing the human N-ras codon 12: minor groove structures of the R(12,1)- and S(12,1)-alpha-(N2-guanyl) stereoisomers determined by 1H nuclear magnetic resonance. 11 1998
1AT4 J.P.Bartley, T.Brown, A.N.Lane 14502 Biochemistry Solution conformation of an intramolecular DNA triplex containing a nonnucleotide linker: comparison with the DNA duplex. 36 1997
1AU5 D.Yang, S.S.van Boom, J.Reedijk, J.H.van Boom, A.H.Wang 12912 Biochemistry Structure and isomerization of an intrastrand cisplatin-cross-linked octamer DNA duplex by NMR analysis. 34 1995
1AU6 D.Yang, S.S.van Boom, J.Reedijk, J.H.van Boom, N.Farrell, A.H.Wang 577 Nat Struct Biol A novel DNA structure induced by the anticancer bisplatinum compound crosslinked to a GpC site in DNA. 2 1995
1AUL S.Kumar, M.W.Reed, H.B.Gamper Jr., V.V.Gorn, E.A.Lukhtanov, M.Foti, J.West, R.B.Meyer Jr., B.I.Schweitzer 831 Nucleic Acids Res Solution structure of a highly stable DNA duplex conjugated to a minor groove binder. 26 1998
1AW4 C.H.Lin, D.J.Patel 817 Chem Biol Structural basis of DNA folding and recognition in an AMP-DNA aptamer complex: distinct architectures but common recognition motifs for DNA and RNA aptamers complexed to AMP. 4 1997
1AX6 B.Mao, A.Gorin, Z.Gu, B.E.Hingerty, S.Broyde, D.J.Patel 14479 Biochemistry Solution structure of the aminofluorene-intercalated conformer of the syn [AF]-C8-dG adduct opposite a--2 deletion site in the NarI hot spot sequence context. 36 1997
1AX7 B.Mao, Z.Gu, A.Gorin, B.E.Hingerty, S.Broyde, D.J.Patel 14491 Biochemistry Solution structure of the aminofluorene-stacked conformer of the syn [AF]-C8-dG adduct positioned at a template-primer junction. 36 1997
1AXL B.Feng, A.Gorin, A.Kolbanovskiy, B.E.Hingerty, N.E.Geacintov, S.Broyde, D.J.Patel 13780 Biochemistry Solution conformation of the (-)-trans-anti-[BP]dG adduct opposite a deletion site in a DNA duplex: intercalation of the covalently attached benzo[a]pyrene into the helix with base displacement of the modified deoxyguanosine into the minor groove. 36 1997
1AXO B.Feng, A.Gorin, B.E.Hingerty, N.E.Geacintov, S.Broyde, D.J.Patel 13769 Biochemistry Structural alignment of the (+)-trans-anti-benzo[a]pyrene-dG adduct positioned opposite dC at a DNA template-primer junction. 36 1997
1AXP J.I.Gyi, A.N.Lane, G.L.Conn, T.Brown 73 Biochemistry Solution structures of DNA.RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexes. 37 1998
1AXU Z.Gu, A.Gorin, R.Krishnasami, B.E.Hingerty, A.K.Basu, S.Broyde, D.J.Patel n/a To be Published Solution Structure of the N-(Deoxyguanosin-8-Yl)-1-Aminopyrene ([Ap]Dg) Adduct Opposite Da in a DNA Duplex n/a n/a
1AXV B.Mao, Z.Gu, A.A.Gorin, J.Chen, B.E.Hingerty, S.Amid, S.Broyde, N.E.Geacintov, D.J.Patel n/a To be Published Solution Structure of the (+)-Cis-Anti-Benzo[A]Pyrene ([Bp]Da) Adduct Opposite Dt in a DNA Duplex n/a n/a
1B0S X.-L.Yang, C.Kaenzig, M.Lee, A.H.-J.Wang 646 Eur.J.Biochem. Binding of Ar-1-144, a Tri-Imidazole DNA Minor Groove Binder, to Ccgg Sequence Analyzed by NMR Spectroscopy 263 1999
1B3P A.Kettani, S.Bouaziz, E.Skripkin, A.Majumdar, W.Wang, R.A.Jones, D.J.Patel 803 Structure (London) Interlocked Mismatch-Aligned Arrowhead DNA Motifs 7 1999
1B4Y M.J.P.Van Dongen, J.F.Doreleijers, G.A.Van Der Marel, J.H.Van Boom, C.W.Hilbers, S.S.Wijmenga 854 Nat.Struct.Biol. Structure and Mechanism of Formation of the H-Y5 Isomer of an Intramolecular DNA Triple Helix 6 1999
1B5K D.Cullinan, A.Korobka, A.P.Grollman, D.J.Patel, M.Eisenberg, C.de los Santos 13319 Biochemistry NMR solution structure of an oligodeoxynucleotide duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite thymidine: comparison with the duplex containing deoxyadenosine opposite the adduct. 35 1996
1B60 D.Cullinan, F.Johnson, C.De Los Santos 851 J.Mol.Biol. Solution Structure of an 11-mer Duplex Containing the 3, N4-Ethenocytosine Adduct Opposite 2'-Deoxycytidine: Implications for the Recognition of Exocyclic Lesions by DNA Glycosylases 296 2000
1B6X D.Cullinan, F.Johnson, A.P.Grollman, M.Eisenberg, C.de los Santos 11933 Biochemistry Solution structure of a DNA duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite 2'-deoxyguanosine. 36 1997
1B6Y A.Korobka, D.Cullinan, M.Cosman, A.P.Grollman, D.J.Patel, M.Eisenberg, C.de los Santos 13310 Biochemistry Solution structure of an oligodeoxynucleotide duplex containing the exocyclic lesion 3,N4-etheno-2'-deoxycytidine opposite 2'-deoxyadenosine, determined by NMR spectroscopy and restrained molecular dynamics. 35 1996
1BAE S.Nonin, A.T.Phan, J.L.Leroy 1231 Structure Solution structure and base pair opening kinetics of the i-motif dimer of d(5mCCTTTACC): a noncanonical structure with possible roles in chromosome stability. 5 1997
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1BE5 X.L.Yang, H.Sugiyama, S.Ikeda, I.Saito, A.H.Wang 1163 Biophys J Structural studies of a stable parallel-stranded DNA duplex incorporating isoguanine:cytosine and isocytosine:guanine basepairs by nuclear magnetic resonance spectroscopy. 75 1998
1BHR H.Robinson, Y.G.Gao, C.Bauer, C.Roberts, C.Switzer, A.H.Wang 10897 Biochemistry 2'-Deoxyisoguanosine adopts more than one tautomer to form base pairs with thymidine observed by high-resolution crystal structure analysis. 37 1998
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1BNA H.R.Drew, R.M.Wing, T.Takano, C.Broka, S.Tanaka, K.Itakura, R.E.Dickerson 2179 Proc Natl Acad Sci U S A Structure of a B-DNA dodecamer: conformation and dynamics. 78 1981
1BP8 M.A.Keniry, E.A.Owen, R.H.Shafer n/a To be Published The Three Dimensional Structure of the 4:1 Mithramycin: D(Acccgggt)2 Complex: Evidence for an Interaction between the E Saccharides n/a n/a
1BPS J.L.Schwartz, J.S.Rice, B.A.Luxon, J.M.Sayer, G.Xie, H.J.Yeh, X.Liu, D.M.Jerina, D.G.Gorenstein 11069 Biochemistry Solution structure of the minor conformer of a DNA duplex containing a dG mismatch opposite a benzo[a]pyrene diol epoxide/dA adduct: glycosidic rotation from syn to anti at the modified deoxyadenosine. 36 1997
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1BWG J.L.Asensio, T.Brown, A.N.Lane 1 Structure Fold Des Solution conformation of a parallel DNA triple helix with 5' and 3' triplex-duplex junctions. 7 1999
1BWT J.M.Aramini, A.Mujeeb, M.W.Germann 5644 Nucleic Acids Res NMR solution structures of [d(GCGAAT-3'-3'-alphaT-5'-5'-CGC)2] and its unmodified control. 26 1998
1BX5 J.M.Aramini, A.Mujeeb, M.W.Germann 5644 Nucleic Acids Res NMR solution structures of [d(GCGAAT-3'-3'-alphaT-5'-5'-CGC)2] and its unmodified control. 26 1998
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1C11 J.Gallego, S.H.Chou, B.R.Reid 840 J Mol Biol Centromeric pyrimidine strands fold into an intercalated motif by forming a double hairpin with a novel T:G:G:T tetrad: solution structure of the d(TCCCGTTTCCA) dimer. 273 1997
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1COC K.McAteer, Y.Jing, J.Kao, J.S.Taylor, M.A.Kennedy 1013 J Mol Biol Solution-state structure of a DNA dodecamer duplex containing a Cis-syn thymine cyclobutane dimer, the major UV photoproduct of DNA. 282 1998
1CQO J.A.Smith, V.T.Tsui, W.J.Chazin, D.A.Case n/a To be Published NMR Structure of the Palindromic DNA Decamer D(Gcgttaacgc)2 n/a n/a
1CR3 A.K.Suri, B.Mao, S.Amin, N.E.Geacintov, D.J.Patel 289 J.Mol.Biol. Solution Conformation of the (+)-Trans-Anti-Benzo[G]Chrysene-Da Adduct Opposite Dt in a DNA Duplex 292 1999
1CS2 S.Leporc, O.Mauffret, G.Tevanian, E.Lescot, S.Fermandjian n/a To be Published NMR Structures of B-DNA D(Ctactgctttag).D(Ctaaagcagtag) n/a n/a
1CS7 F.D.Lewis, X.Liu, Y.Wu, S.E.Miller, M.R.Wasielewski, R.L.Letsinger, R.Sanishvili, A.Joachimiak, V.Tereshko, M.Egli 9905 J.Am.Chem.Soc. Structure and Photoinduced Electron Transfer in Exceptionally Stable Synthetic DNA Hairpins with Stilbenediether Linkers 121 1999
1CVX C.L.Kielkopf, R.E.Bremer, S.White, J.W.Szewczyk, J.M.Turner, E.E.Baird, P.B.Dervan, D.C.Rees 557 J.Mol.Biol. Structural Effects of DNA Sequence on Ta Recognition by Hydroxypyrrole/Pyrrole Pairs in the Minor Groove 295 2000
1CVY C. L.Kielkopf, R. E.Bremer, S.White, J.W.Szewczyk, J.M.Turner, E. E.Baird, P. B.Dervan, D. C.Rees 557 J.Mol.Biol. Structural Effects of DNA Sequence on Ta Recognition by Hydroxypyrrole/Pyrrole Pairs in the Minor Groove 295 2000
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1CX3 J.Gallego, B.R.Reid 15104 Biochemistry Solution Structure and Dynamics of a Complex between DNA and the Antitumor Bisnaphthalimide Lu-79553: Intercalated Ring Flipping on the Millisecond Time Scale 38 1999
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1D15 L.D.Williams, C.A.Frederick, G.Ughetto, A.Rich 5533 Nucleic Acids Res Ternary interactions of spermine with DNA: 4'-epiadriamycin and other DNA: anthracycline complexes. 18 1990
1D16 R.Chattopadhyaya, S.Ikuta, K.Grzeskowiak, R.E.Dickerson 175 Nature X-ray structure of a DNA hairpin molecule. 334 1988
1D17 L.D.Williams, M.Egli, G.Qi, P.Bash, G.A.van der Marel, J.H.van Boom, A.Rich, C.A.Frederick 2225 Proc Natl Acad Sci U S A Structure of nogalamycin bound to a DNA hexamer. 87 1990
1D18 J.D.Baleja, M.W.Germann, J.H.van de Sande, B.D.Sykes 411 J Mol Biol Solution conformation of purine-pyrimidine DNA octamers using nuclear magnetic resonance, restrained molecular dynamics and NOE-based refinement. 215 1990
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1D21 Y.G.Gao, Y.C.Liaw, H.Robinson, A.H.Wang 10307 Biochemistry Binding of the antitumor drug nogalamycin and its derivatives to DNA: structural comparison. 29 1990
1D22 Y.G.Gao, Y.C.Liaw, H.Robinson, A.H.Wang 10307 Biochemistry Binding of the antitumor drug nogalamycin and its derivatives to DNA: structural comparison. 29 1990
1D23 K.Grzeskowiak, K.Yanagi, G.G.Prive, R.E.Dickerson 8861 J Biol Chem The structure of B-helical C-G-A-T-C-G-A-T-C-G and comparison with C-C-A-A-C-G-T-T-G-G. The effect of base pair reversals. 266 1991
1D24 S.L.Ginell, S.Kuzmich, R.A.Jones, H.M.Berman 10461 Biochemistry Crystal and molecular structure of a DNA duplex containing the carcinogenic lesion O6-methylguanine. 29 1990
1D26 U.Heinemann, L.N.Rudolph, C.Alings, M.Morr, W.Heikens, R.Frank, H.Blocker 427 Nucleic Acids Res Effect of a single 3'-methylene phosphonate linkage on the conformation of an A-DNA octamer double helix. 19 1991
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1D32 Q.Gao, L.D.Williams, M.Egli, D.Rabinovich, S.L.Chen, G.J.Quigley, A.Rich 2422 Proc Natl Acad Sci U S A Drug-induced DNA repair: X-ray structure of a DNA-ditercalinium complex. 88 1991
1D33 A.H.Wang, Y.G.Gao, Y.C.Liaw, Y.K.Li 3812 Biochemistry Formaldehyde cross-links daunorubicin and DNA efficiently: HPLC and X-ray diffraction studies. 30 1991
1D35 Y.G.Gao, Y.C.Liaw, Y.K.Li, G.A.van der Marel, J.H.van Boom, A.H.Wang 4845 Proc Natl Acad Sci U S A Facile formation of a crosslinked adduct between DNA and the daunorubicin derivative MAR70 mediated by formaldehyde: molecular structure of the MAR70-d(CGTnACG) covalent adduct. 88 1991
1D36 Y.G.Gao, Y.C.Liaw, Y.K.Li, G.A.van der Marel, J.H.van Boom, A.H.Wang 4845 Proc Natl Acad Sci U S A Facile formation of a crosslinked adduct between DNA and the daunorubicin derivative MAR70 mediated by formaldehyde: molecular structure of the MAR70-d(CGTnACG) covalent adduct. 88 1991
1D37 Y.G.Gao, A.H.Wang 137 Anticancer Drug Des n/a 6 1991
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1D39 T.F.Kagawa, B.H.Geierstanger, A.H.Wang, P.S.Ho 20175 J Biol Chem Covalent modification of guanine bases in double-stranded DNA. The 1.2-A Z-DNA structure of d(CGCGCG) in the presence of CuCl2. 266 1991
1D3R S.Rhee, Z.-J.Han, K.Liu, H.T.Miles, D.R.Davies 16810 Biochemistry Structure of a Triple Helical DNA with a Triplex-Duplex Junction 38 1999
1D3X M.Tarkoy, A.K.Phipps, P.Schultze, J.Feigon 5810 Biochemistry Solution structure of an intramolecular DNA triplex linked by hexakis(ethylene glycol) units: d(AGAGAGAA-(EG)6-TTCTCTCT-(EG)6-TCTCTCTT). 37 1998
1D40 B.H.Geierstanger, T.F.Kagawa, S.L.Chen, G.J.Quigley, P.S.Ho 20185 J Biol Chem Base-specific binding of copper(II) to Z-DNA. The 1.3-A single crystal structure of d(m5CGUAm5CG) in the presence of CuCl2. 266 1991
1D41 G.W.Zhou, P.S.Ho 7229 Biochemistry Stabilization of Z-DNA by demethylation of thymine bases: 1.3-A single-crystal structure of d(m5CGUAm5CG). 29 1990
1D42 U.Schmitz, D.A.Pearlman, T.L.James 271 J Mol Biol Solution structure of [d(GTATATAC)]2 via restrained molecular dynamics simulations with nuclear magnetic resonance constraints derived from relaxation matrix analysis of two-dimensional nuclear Overhauser effect experiments. 221 1991
1D43 J.R.Quintana, A.A.Lipanov, R.E.Dickerson 10294 Biochemistry Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. 30 1991
1D44 J.R.Quintana, A.A.Lipanov, R.E.Dickerson 10294 Biochemistry Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. 30 1991
1D45 J.R.Quintana, A.A.Lipanov, R.E.Dickerson 10294 Biochemistry Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. 30 1991
1D46 J.R.Quintana, A.A.Lipanov, R.E.Dickerson 10294 Biochemistry Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. 30 1991
1D48 M.Egli, L.D.Williams, Q.Gao, A.Rich 11388 Biochemistry Structure of the pure-spermine form of Z-DNA (magnesium free) at 1-A resolution. 30 1991
1D49 J.R.Quintana, K.Grzeskowiak, K.Yanagi, R.E.Dickerson 379 J Mol Biol Structure of a B-DNA decamer with a central T-A step: C-G-A-T-T-A-A-T-C-G. 225 1992
1D53 V.D.Kumar, R.W.Harrison, L.C.Andrews, I.T.Weber 1541 Biochemistry Crystal structure at 1.5-A resolution of d(CGCICICG), an octanucleotide containing inosine, and its comparison with d(CGCG) and d(CGCGCG) structures. 31 1992
1D54 G.A.Leonard, T.Brown, W.N.Hunter 69 Eur J Biochem Anthracycline binding to DNA. High-resolution structure of d(TGTACA) complexed with 4'-epiadriamycin. 204 1992
1D56 H.Yuan, J.Quintana, R.E.Dickerson 8009 Biochemistry Alternative structures for alternating poly(dA-dT) tracts: the structure of the B-DNA decamer C-G-A-T-A-T-A-T-C-G. 31 1992
1D57 H.Yuan, J.Quintana, R.E.Dickerson 8009 Biochemistry Alternative structures for alternating poly(dA-dT) tracts: the structure of the B-DNA decamer C-G-A-T-A-T-A-T-C-G. 31 1992
1D58 B.Langlois d'Estaintot, B.Gallois, T.Brown, W.N.Hunter 3561 Nucleic Acids Res The molecular structure of a 4'-epiadriamycin complex with d(TGATCA) at 1.7A resolution: comparison with the structure of 4'-epiadriamycin d(TGTACA) and d(CGATCG) complexes. 20 1992
1D59 C.Kang, X.Zhang, R.Ratliff, R.Moyzis, A.Rich 126 Nature Crystal structure of four-stranded Oxytricha telomeric DNA. 356 1992
1D60 A.Lipanov, M.L.Kopka, M.Kaczor-Grzeskowiak, J.Quintana, R.E.Dickerson 1373 Biochemistry Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA. 32 1993
1D61 A.Lipanov, M.L.Kopka, M.Kaczor-Grzeskowiak, J.Quintana, R.E.Dickerson 1373 Biochemistry Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA. 32 1993
1D62 A.A.Lipanov, M.L.Kopka, M.Kaczor-Grzeskowiak, R.E.Dickerson n/a To be Published The Structure of a /B-DNA Decamer with an I(Slash)A Mismatch and Comparison with the G(Slash)A Mismatch n/a n/a
1D63 D.G.Brown, M.R.Sanderson, E.Garman, S.Neidle 481 J Mol Biol Crystal structure of a berenil-d(CGCAAATTTGCG) complex. An example of drug-DNA recognition based on sequence-dependent structural features. 226 1992
1D64 K.J.Edwards, T.C.Jenkins, S.Neidle 7104 Biochemistry Crystal structure of a pentamidine-oligonucleotide complex: implications for DNA-binding properties. 31 1992
1D65 K.J.Edwards, D.G.Brown, N.Spink, J.V.Skelly, S.Neidle 1161 J Mol Biol Molecular structure of the B-DNA dodecamer d(CGCAAATTTGCG)2. An examination of propeller twist and minor-groove water structure at 2.2 A resolution. 226 1992
1D67 B.Gallois, B.L.Destaintot, T.Brown, W.N.Hunter 311 Acta Crystallogr D Biol Crystallogr THE STRUCTURE OF AN IDARUBICIN-D(TGATCA) COMPLEX AT HIGH-RESOLUTION. 49 1993
1D68 J.W.Cheng, S.H.Chou, M.Salazar, B.R.Reid 118 J Mol Biol Solution structure of [d(GCGTATACGC)]2. 228 1992
1D69 S.H.Chou, J.W.Cheng, B.R.Reid 138 J Mol Biol Solution structure of [d(ATGAGCGAATA)]2. Adjacent G:A mismatches stabilized by cross-strand base-stacking and BII phosphate groups. 228 1992
1D6D V.Kuryavyi, A.Kettani, W.Wang, R.Jones, D.J.Patel 455 J.Mol.Biol. A Diamond Shaped Zipper-Like DNA Architecture Containing Triads Sandwiched between Mismatches and Tetrads 295 2000
1D70 U.Schmitz, I.Sethson, W.M.Egan, T.L.James 510 J Mol Biol Solution structure of a DNA octamer containing the Pribnow box via restrained molecular dynamics simulation with distance and torsion angle constraints derived from two-dimensional nuclear magnetic resonance spectral fitting. 227 1992
1D71 D.Sprous, S.C.Harvey 0 J Biol Chem A three-dimensional model for nodule DNA. 267 1992
1D75 G.A.Leonard, A.Guy, T.Brown, R.Teoule, W.N.Hunter 8415 Biochemistry Conformation of guanine-8-oxoadenine base pairs in the crystal structure of d(CGCGAATT(O8A)GCG). 31 1992
1D76 B.Schneider, S.L.Ginell, R.Jones, B.Gaffney, H.M.Berman 9622 Biochemistry Crystal and molecular structure of a DNA fragment containing a 2-aminoadenine modification: the relationship between conformation, packing, and hydration in Z-DNA hexamers. 31 1992
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1DCV B.F.Eichman, J.M.Vargason, B.H.M.Mooers, P.S.Ho 3971 Proc.Nat.Acad.Sci.USA The Holliday Junction in an Inverted Repeat DNA Sequence: Sequence Effects on the Structure of Four-Way Junctions 97 2000
1DCW B.F.Eichman, J.M.Vargason, B.H.M.Mooers, P.S.Ho 3971 Proc.Nat.Acad.Sci.USA The Holliday Junction in an Inverted Repeat Sequence: Sequence Effects on the Structure of Four-Way Junctions 97 2000
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1DGO M.Ghosh, N.V.Kumar, U.Varshney, K.V.R.Chary 1906 Nucleic Acids Res. Structural Basis for Uracil DNA Glycosylase (Udg) Interaction with DNA: NMR Characterization 9 2000
1DJ6 H.Ohishi, K.-I.Tomita, I.Nakanishi, M.Ohtsuchi, T.Hakoshima, A.Rich n/a To be Published Crystal Structure of a Molecular Complex of a Left-Handed Z-DNA Hexamer, D(Cg) 3, with Synthetic Polyamine: Polyamine Binding in the Minor Groove at Room Temperature n/a n/a
1DJD Z.Li, H.Y.Kim, P.J.Tamura, C.M.Harris, T.M.Harris, M.P.Stone 14820 Biochemistry Role of a Polycyclic Aromatic Hydrocarbon Bay Region Ring in Modulating DNA Adduct Structure: The Non-Bay Region (8S,9R,10S,11R)-N(6)-[11-(8,9,10,11- Tetrahydro-8,9, 10-Trihydroxybenz[A]Anthracenyl)]-2'-Deoxyadenosyl Adduct in Codon 61 of the Human N-Ras Protooncogene 38 1999
1DK6 D.A.Klewer, A.Hoskins, V.J.Davisson, D.E.Bergstrom, A.C.Liwang n/a To be Published NMR Structure Analysis of the DNA Nine Base Pair Duplex D(Catgagtac) D(Gtac( Np3)Catg) n/a n/a
1DK9 D.A.Klewer, A.Hoskins, P.Zhang, V.J.Davisson, D.E.Bergstrom, A.C.Liwang 4514 Nucleic Acids Res. Structure of a DNA Duplex Containing Nucleoside Analog 1-(2'-Deoxy-Beta-D-Ribofuranosyl)-3-Nitropyrrole and the Structure of the Unmodified Control 28 2000
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1DNZ H.Robinson, Y.-G.Gao, R.Sanishvili, A.Joachimiak, A.H.-J.Wang 1760 Nucleic Acids Res. Hexahydrated Magnesium Ions Bind in the Deep Major Groove and at the Outer Mouth of the A-Form Nucleic Acid Duplexes 28 2000
1DOU K.K.Woods, L.Mcfail-Isom, C.C.Sines, S.B.Howerton, R.K.Stephens, L.D.Williams 1546 J.Am.Chem.Soc. Monovalent Cations Sequester within the A-Tract Minor Groove of [D(Cgcgaattcgcg)]2 122 2000
1DPN M.Egli, V.Tereshko, M.Teplova, G.Minasov, A.Joachimiak, R.Sanishvili, C.M.Weeks, R.Miller, M.A.Maier, H.An, P.Dan Cook, M.Manoharan 234 Biopolymers X-Ray Crystallographic Analysis of the Hydration of A-and B-Form DNA at Atomic Resolution 48 1998
1DSA P.S.Eis, J.A.Smith, J.M.Rydzewski, D.A.Case, D.L.Boger, W.J.Chazin 237 J Mol Biol High resolution solution structure of a DNA duplex alkylated by the antitumor agent duocarmycin SA. 272 1997
1DSI P.S.Eis, J.A.Smith, J.M.Rydzewski, D.A.Case, D.L.Boger, W.J.Chazin 237 J Mol Biol High resolution solution structure of a DNA duplex alkylated by the antitumor agent duocarmycin SA. 272 1997
1DUF N.Tjandra, S.Tate, A.Ono, M.Kainosho, A.Bax 6190 J.Am.Chem.Soc. The NMR Structure of a DNA Dodecamer in an Aqueous Dilute Liquid Crystalline Phase 122 2000
1DXA H.J.Yeh, J.M.Sayer, X.Liu, A.S.Altieri, R.A.Byrd, M.K.Lakshman, H.Yagi, E.J.Schurter, D.G.Gorenstein, D.M.Jerina 13570 Biochemistry NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10S adduct derived from trans addition of a deoxyadenosine N6-amino group to (+)-(7R,8S,9S,10R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10- tetrahydrobenzo[a]pyrene: an unusual syn glycosidic torsion angle at the modified dA. 34 1995
1ECU J.H.Wu, C.Chang, J.M.Pei, Q.Xiao, Y.Y.Shi n/a To be Published Solution Structure of E2F Binding DNA Fragment Gcgcgaaac-T-Gtttcgcgc Studied by Molecular Dynamics Simulation and Two Dimensional NMR Experiment n/a 2000
1EDR T.Chatake, T.Hikima, A.Ono, Y.Ueno, A.Matsuda, A.Takenaka 1223 J.Mol.Biol. Crystallographic Studies on Damaged Dnas. II. N6-Methoxyadenine Can Present Two Alternate Faces for Watson-Crick Base-Pairing, Leading to Pyrimidine Transition Mutagenesis 294 1999
1EEG A.Kettani, A.Gorin, A.Majumdar, T.Hermann, E.Skripkin, H.Zhao, R.Jones, D.J.Patel 627 J.Mol.Biol. A Dimeric DNA Interface Stabilized by Stacked A(Gggg)A Hexads and Coordinated Monovalent Cations 297 2000
1EEK E.T.Kool, T.R.Krugh, K.M.Guckian n/a To be Published Solution Structure of a Nonpolar, Non Hydrogen Bonded Base Pair Surrogate in DNA. n/a 2000
1EEL S.Neidle, I.J.Simpson n/a To be Published Structure of Dcgcgaattcgcg Bis[Piperidino-Ethyl]-Furamidine Complex n/a n/a
1EHV E.M.Johansson, G.Parkinson, S.Neidle 551 J.Mol.Biol. A New Crystal Form for the Dodecamer C-G-C-G-A-A-T-T-C-G-C-G: Symmetry Effects on Sequence-Dependent DNA Structure 300 2000
1EI4 G.Minasov, M.Teplova, P.Nielsen, J.Wengel, M.Egli 3525 Biochemistry Structural Basis of Cleavage by Rnase H of Hybrids of Arabinonucleic Acids and RNA 39 2000
1EKH M.Gochin 441 Structure Fold Des. A High-Resolution Structure of a DNA-Chromomycin-Co(II) Complex Determined from Pseudocontact Shifts in Nuclear Magnetic Resonance 8 2000
1EKI M.Gochin 441 Structure Fold Des. A High-Resolution Structure of a DNA-Chromomycin-Co(II) Complex Determined from Pseudocontact Shifts in Nuclear Magnetic Resonance 8 2000
1EKW V.Thiviyanathan, B.A.Luxon, N.B.Leontis, D.Donne, D.G.Gorenstein 209 J.Biomol.NMR Hybrid-Hybrid Matrix Structural Refinement of a DNA Three-Way Junction from 3D Noesy-Noesy 14 1999
1EL2 A.T.Phan, M.Gueron, J.-L.Leroy 123 J.Mol.Biol. The Solution Structure and Internal Motions of a Fragment of the Cytidine-Rich Strand of the Human Telomere 299 2000
1ELN A.T.Phan, M.Gueron, J.-L.Leroy 123 J.Mol.Biol. The Solution Structure and Internal Motions of a Fragment of the Cytidine-Rich Strand of the Human Telomere 299 2000
1EM0 M.Bennett, A.Krah, F.Wien, E.Garman, R.McKenna, M.Sanderson, S.Neidle 9476 Proc.Nat.Acad.Sci.USA A DNA-Porphyrin Minor-Groove Complex at Atomic Resolution: The Structural Consequences of Porphyrin Ruffling 97 2000
1EMQ R.V.Hosur, P.K.Patel 2457 Nucleic Acids Res. NMR Observation of T-Tetrads in a Parallel Stranded DNA Quadruplex Formed by Saccharomyces Cerevisiae Telomere Sequence 27 1999
1EN1 P.E.Johnson, R.B.Turner, Z.R.Wu, J.G.Levin, M.F.Summers n/a To be Published Structure of the HIV-1 Minus Strand Primer Binding Site n/a n/a
1EN3 T.K.Chiu, R.E.Dickerson 915 J.Mol.Biol. 1 a Crystal Structures of B-DNA Reveal Sequence-Specific Binding and Groove-Specific Bending of DNA by Magnesium and Calcium 301 2000
1EN8 T.K.Chiu, R.E.Dickerson 915 J.Mol.Biol. 1 a Crystal Structures of B-DNA Reveal Sequence-Specific Binding and Groove-Specific Bending of DNA by Magnesium and Calcium 301 2000
1EN9 T.K.Chiu, R.E.Dickerson 915 J.Mol.Biol. 1 a Crystal Structures of B-DNA Reveal Sequence-Specific Binding and Groove-Specific Bending of DNA by Magnesium and Calcium 301 2000
1ENE T.K.Chiu, R.E.Dickerson 915 J.Mol.Biol. 1 a Crystal Structures of B-DNA Reveal Sequence-Specific Binding and Groove-Specific Bending of DNA by Magnesium and Calcium 301 2000
1ENN M.Soler-Lopez, L.Malinina, J.A.Subirana 23034 J.Biol.Chem. Solvent Organization in an Oligonucleotide Crystal: The Structure of D(Gcgaattcg)2 at Atomic Resolution 275 2000
1ESS A.Y.Denisov, A.Sandstrom, T.V.Maltseva, D.V.Pyshnyi, E.M.Ivanova, V.F.Zarytova, J.Chattopadhyaya 499 J Biomol Struct Dyn The NMR structure of estrone (Es)-tethered tandem DNA duplex: [d(5'pCAGCp3')-Es] + [Es-d(5'pTCCA3')]: d(5'pTGGAGCTG3'). 15 1997
1EU2 N.Escaja, E.Pedroso, M.Rico, C.Gonzalez 12732 J.Am.Chem.Soc. Dimeric Solution Structure of Two Cyclic Octamers: Four-Stranded DNA Structures Stabilized by A:T:A:T and G:C:G:C 122 2000
1EU6 N.Escaja, E.Pedroso, M.Rico, C.Gonzalez 12732 J.Am.Chem.Soc. Dimeric Solution Structure of Two Cyclic Octamers: Four-Stranded DNA Structures Stabilized by A:T:A:T and G:C:G:C 122 2000
1EVM P.K.Patel, A.S.R.Koti, R.V.Hosur 3836 Nucleic Acids Res. NMR Studies on Truncated Sequences of Human Telomeric DNA: Observation of a Novel A-Tetrad 27 1999
1EVN P.K.Patel, A.S.R.Koti, R.V.Hosur 3836 Nucleic Acids Res. NMR Studies on Truncated Sequences of Human Telomeric DNA: Observation of a Novel A-Tetrad 27 1999
1EVO P.K.Patel, N.S.Bhavesh, R.V.Hosur 967 Biochem.Biophys.Res.Comm. NMR Observation of a Novel C-Tetrad in the Structure of the Sv40 Repeat Sequence Gggcgg 270 2000
1EW1 T.Nishinaka, Y.Ito, S.Yokoyama, T.Shibata 6623 Proc.Nat.Acad.Sci.USA An Extended DNA Structure Through Deoxyribose-Base Stacking Induced by Reca Protein 94 1997
1EXL S.Smirnov, F.Johnson, R.Marumoto, C.De Los Santos n/a To be Published Structure of an 11-mer DNA Duplex Containing the Carbocyclic Nucleotide Analog: 2'-Deoxyaristeromycin. n/a 2000
1EZ5 R.Garcia-Nieto, I.Manzanares, C.Cuevas, F.Gago 7172 J.Am.Chem.Soc. Bending of DNA Upon Binding of Ecteinascidin 743 and Phthalascidin 650 Studied by Unrestrained Molecular Dynamics Simulations 122 2000
1EZH R.Garcia-Nieto, I.Manzanares, C.Cuevas, F.Gago 7172 J.Am.Chem.Soc. Bending of DNA Upon Binding of Ecteinascidin 743 and Phthalascidin 650 Studied by Unrestrained Molecular Dynamics Simulations 122 2000
1EZN B.N.M.Van Buuren, F.J.Overmars, J.H.Ippel, C.Altona, S.S.Wijmenga 371 J.Mol.Biol. Solution Structure of a DNA Three-Way Junction Containing Two Unpaired Thymidine Bases. Identification of Sequence Features that Decide Conformer Selection 304 2000
1F3S A.Kettani, G.Basu, A.Gorin, A.Majumdar, E.Skripkin, D.J.Patel 129 J.Mol.Biol. A Two-Stranded Template-Based Approach to G.(C-A) Triad Formation: Designing Novel Structural Elements Into an Existing DNA Framework 301 2000
1F69 J.M.Vargason, B.F.Eichman, P.S.Ho 758 Nat.Struct.Biol. The Extended and Eccentric E-DNA Structure Induced by Cytosine Methylation or Bromination 7 2000
1F6C J.M.Vargason, B.F.Eichman, P.S.Ho 758 Nat.Struct.Biol. The Extended and Eccentric E-DNA Structure Induced by Cytosine Methylation or Bromination 7 2000
1F6E J.M.Vargason, B.F.Eichman, P.S.Ho 758 Nat.Struct.Biol. The Extended and Eccentric E-DNA Structure Induced by Cytosine Methylation or Bromination 7 2000
1F6I J.M.Vargason, B.F.Eichman, P.S.Ho 758 Nat.Struct.Biol. The Extended and Eccentric E-DNA Structure Induced by Cytosine Methylation or Bromination 7 2000
1F6J J.M.Vargason, B.F.Eichman, P.S.Ho 758 Nat.Struct.Biol. The Extended and Eccentric E-DNA Structure Induced by Cytosine Methylation or Bromination 7 2000
1FD5 X.-L.Yang, H.Robinson, Y.-G.Gao, A.H.-J.Wang 10950 Biochemistry Binding of a Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms 39 2000
1FDG X.-L.Yang, H.Robinson, Y.-G.Gao, A.H.-J.Wang 10950 Biochemistry Binding of a Macrocyclic Bisacridine and Ametantrone to Cgtacg Involves Similar Unusual Intercalation Platforms 39 2000
1FHY B.F.Eichman, B.H.M.Mooers, M.Alberti, J.E.Hearst, P.S.Ho 15 J.Mol.Biol. The Crystal Structures of Psoralen Cross-Linked Dnas: Drug-Dependent Formation of Holliday Junctions 308 2001
1FHZ B.F.Eichman, B.H.M.Mooers, M.Alberti, J.E.Hearst, P.S.Ho 15 J.Mol.Biol. The Crystal Structures of Psoralen Cross-Linked Dnas: Drug-Dependent Formation of Holliday Junctions 308 2001
1FJ5 S.Shimotakahara, A.Gorin, A.Kolbanovskiy, A.Kettani, B.E.Hingerty, S.Amin, S.Broyde, N.Geacintov, D.J.Patel 375 J.Mol.Biol. Accomodation of S-Cis-Tamoxifen-N2-Guanine Adduct within a Bent and Widened DNA Minor Groove 302 2000
1FJB H.F.Chen, F.Johnson, A.P.Grollman, D.J.Patel 23 MAGNETIC RESONANCE IN CHEMISTRY Structural studies of the ionizing radiation adduct 7,8-dihydro-8-oxoadenine (A(oxo)) positioned opposite thymine in a DNA duplex. 34 1996
1FKY Y.Boulard, J.A.Cognet, G.V.Fazakerley 331 J Mol Biol Solution structure as a function of pH of two central mismatches, C . T and C . C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics. 268 1997
1FKZ Y.Boulard, J.A.Cognet, G.V.Fazakerley 331 J Mol Biol Solution structure as a function of pH of two central mismatches, C . T and C . C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics. 268 1997
1FMQ I.J.Simpson, M.Lee, A.Kumar, D.W.Boykin, S.Neidle n/a To be Published DNA Minor Groove Interactions and the Biological Activity of 2,5-Bis-[4-(N-Alkylamidino)Phenyl] Furans n/a 2000
1FMS I.J.Simpson, M.Lee, A.Kumar, D.W.Boykin, S.Neidle n/a To be Published DNA Minor Groove Interactions and the Biological Activity of 2,5-Bis-[4-(N-Alkylamidino)Phenyl] Furans n/a 2000
1FN1 A.Adams, J.M.Guss, C.A.Collyer, W.A.Denny, L.P.G.Wakelin 4244 Nucleic Acids Res. A Novel Form of Interaclation Involving Four DNA Duplexes in an Acridine-4-Carboxamide Complex of D(Cgtacg)2 28 2000
1FN2 A.Adams, J.M.Guss, C.A.Collyer, W.A.Denny, L.P.G.Wakelin 4244 Nucleic Acids Res. A Novel Form of Interaclation Involving Four DNA Duplexes in an Acridine-4-Carboxamide Complex of D(Cgtacg)2 28 2000
1FQ2 C.C.Sines, L.Mcfail-Isom, S.B.Howerton, D.Vanderveer, L.D.Williams 11048 J.Am.Chem.Soc. Cations Mediate B-DNA Conformational Heterogeneity 122 2000
1FQP M.A.Keniry, G.D.Strahan, E.A.Owen, R.H.Shafer 631 Eur J Biochem Solution structure of the Na+ form of the dimeric guanine quadruplex [d(G3T4G3)]2. 233 1995
1FTD J.Mann, A.Baron, Y.Opoku-Boahen, E.Johansson, G.Parkinson, L.R.Kelland, S.Neidle 138 J.Med.Chem. A New Class of Symmetric Bisbenzimidazole-Based DNA Minor Groove Binding Agents Showing Antitumor Activity. 44 2001
1FV7 O.Mauffret, C.El Amri, F.Santamaria, G Tevanian, B.Rayner, S.Fermandjian 4403 Nucleic Acids Res. A Two B-Z Junction Containing DNA Resolves Into an All Right Handed Double Helix 28 2000
1FV8 C.El Amri, O.Mauffret, F.Santamaria, B.Rayner, S.Fermandjian n/a To be Published NMR Study of an Heterochiral Hairpin n/a n/a
1FYY D.E.Volk, J.S.Rice, B.A.Luxon, H.J.C.Yeh, C.Liang, G.Xie, J.M.Sayer, D.M.Jerina, D.G.Gorenstein 14040 Biochemistry NMR Evidence for Syn-Anti Interconversion of a Trans Opened (10R)-Da Adduct of Benzo[A]Pyrene (7S,8R)-Diol (9R,10S)-Epoxide in a DNA Duplex 39 2000
1FZX D.Macdonald, K.Herbert, X.Zhang, T.Pologruto, P.Lu 1081 J.Mol.Biol. Solution Structure of an A-Tract DNA Bend 306 2001
1G00 L.Urpi, J.Navaza, J.A.Subirana 363 J.Biomol.Struct.Dyn. Alternation of DNA and Solvent Layers in the a Form of D(Ggcgcc) Obtained by Ethanol Crystallization 18 2000
1G14 D.Macdonald, K.Herbert, X.Zhang, T.Pologruto, P.Lu 1081 J.Mol.Biol. Solution Structure of an A-Tract DNA Bend 306 2001
1G1N L.Kozerski, A.P.Mazurek, R.Kawecki, W.Bocian, P.Krajewski, E.Bednarek, J.Sitkowski, M.P.Williamson, A.J.G.Moir, P.E.Hansen 1132 Nucleic Acids Res. A Nicked Duplex Decamer DNA with a Peg6 Tether 29 2001
1G22 S.Nonin-Lecomte, J.-L.Leroy 491 J.Mol.Biol. Structure of a C-Rich Strand Fragment of the Human Centromeric Satellite III: A Ph-Dependent Intercalation Topology. 309 2001
1G5D S.T.Hoehn, C.J.Turner, J.Stubbe 3413 Nucleic Acids Res. Solution Structure of an Oligonucleotide Containing an Abasic Site: Evidence for an Unusual Deoxyribose Conformation 29 2001
1G5E S.T.Hoehn, C.J.Turner, J.Stubbe 3413 Nucleic Acids Res. Solution Structure of an Oligonucleotide Containing an Abasic Site: Evidence for an Unusual Deoxyribose Conformation 29 2001
1G5L S.T.Hoehn, H.-D.Junker, R.C.Bunt, C.J.Turner, J.Stubbe 5894 Biochemistry Solution Structure of Co(III)-Bleomycin-Ooh Bound to a Phosphoglycolate Lesion Containing Oligonucleotide: Implications for Bleomycin-Induced Double-Strand DNA Cleavage 40 2001
1G75 M.Tsunoda, N.Karino, Y.Ueno, A.Matsuda, A.Takenaka 345 Acta Crystallogr., Sect.D Crystallization and Preliminary X-Ray Analysis of a DNA Dodecamer Containing 2'-Deoxy-5-Formyluridine: What is the Role of Magnesium Cation in Crystallization of Dickerson Type DNA Dodecamers? 57 2001
1G7Z R.J.Isaacs, H.P.Spielmann 525 J.Mol.Biol. Relationship of DNA Structure to Internal Dynamics: Correlation of Helical Parameters from Noe-Based NMR Solution Structures of D(Gcgtacgc)2 and D(Cgctagcg)2 with 13C Order Parameters Implies Conformational Coupling in Dinucleotide Units 307 2001
1G80 R.J.Isaacs, H.P.Spielmann 525 J.Mol.Biol. Relationship of DNA Structure to Internal Dynamics: Correlation of Helical Parameters from Noe-Based NMR Solution Structures of D(Gcgtacgc)2 and D(Cgctagcg)2 with 13C Order Parameters Implies Conformational Coupling in Dinucleotide Units 307 2001
1G8N M.Tsunoda, N.Karino, Y.Ueno, A.Matsuda, A.Takenaka 345 Acta Crystallogr., Sect.D Crystallization and Preliminary X-Ray Analysis of a DNA Dodecamer Containing 2'-Deoxy-5-Formyluridine: What is the Role of Magnesium Cation in Crystallization of Dickerson Type DNA Dodecamers? 57 2001
1G8U M.Tsunoda, N.Karino, Y.Ueno, A.Matsuda, A.Takenaka 345 Acta Crystallogr., Sect.D Crystallization and Preliminary X-Ray Analysis of a DNA Dodecamer Containing 2'-Deoxy-5-Formyluridine: What is the Role of Magnesium Cation in Crystallization of Dickerson Type DNA Dodecamers? 57 2001
1G8V M.Tsunoda, N.Karino, Y.Ueno, A.Matsuda, A.Takenaka 345 Acta Crystallogr., Sect.D Crystallization and Preliminary X-Ray Analysis of a DNA Dodecamer Containing 2'-Deoxy-5-Formyluridine: What is the Role of Magnesium Cation in Crystallization of Dickerson Type DNA Dodecamers? 57 2001
1GIP J.Kuszewski, C.Schwieters, G.M.Clore 3903 J.Am.Chem.Soc. Improving the Accuracy of NMR Structures of DNA by Means of a Database Potential of Mean Force Describing Base-Base Positional Interactions 123 2001
1GIZ S.T.Hoehn, C.J.Turner, J.Stubbe 3413 Nucleic Acids Res. Solution Structure of an Oligonucleotide Containing an Abasic Site: Evidence for an Unusual Deoxyribose Conformation 29 2001
1GJ0 S.T.Hoehn, C.J.Turner, J.Stubbe 3413 Nucleic Acids Res. Solution Structure of an Oligonucleotide Containing an Abasic Site: Evidence for an Unusual Deoxyribose Conformation 29 2001
1GJ2 S.T.Hoehn, H.-D.Junker, R.C.Bunt, C.J.Turner, J.Stubbe 5894 Biochemistry Solution Structure of Co(III)-Bleomycin-Ooh Bound to a Phosphoglycolate Lesion Containing Oligonucleotide: Implications for Bleomycin-Induced Double-Strand DNA Cleavage 40 2001
1GN7 K.M.Koshlap, P.Schultze, H.Brunar, P.B.Dervan, J.Feigon 2659 Biochemistry Solution structure of an intramolecular DNA triplex containing an N7-glycosylated guanine which mimics a protonated cytosine. 36 1997
1HM1 H.Mao, Z.Deng, F.Wang, T.M.Harris, M.P.Stone 4374 Biochemistry An intercalated and thermally stable FAPY adduct of aflatoxin B1 in a DNA duplex: structural refinement from 1H NMR. 37 1998
1HT4 Z.Lin, C.De Los Santos 341 J.Mol.Biol. NMR Characterization of Clustered Bistrand Abasic Site Lesions: Effect of Orientation on Their Solution Structure 308 2001
1HT7 Z.Lin, C.De Los Santos 341 J.Mol.Biol. NMR Characterization of Clustered Bistrand Abasic Site Lesions: Effect of Orientation on Their Solution Structure 308 2001
1HWV C.H.Lin, X.Huang, A.Kolbanovskii, B.E.Hingerty, S.Amin, S.Broyde, N.E.Geacintov, D.J.Patel 1059 J.Mol.Biol. Molecular Topology of Polycyclic Aromatic Carcinogens Determines DNA Adduct Conformation: A Link to Tumorigenic Activity 306 2001
1HX4 C.H.Lin, X.Huang, A.Kolbanovskii, B.E.Hingerty, S.Amin, S.Broyde, N.E.Geacintov, D.J.Patel 1059 J.Mol.Biol. Molecular Topology of Polycyclic Aromatic Carcinogens Determines DNA Adduct Conformation: A Link to Tumorigenic Activity 306 2001
1HZ0 K.Brown, M.Cosman 8507 Proc.Nat.Acad.Sci.USA Solution Structure of the 2-Amino-1-Methyl-6-Phenylimidazo[4,5-B]Pyridine C8-Deoxyguanosine Adduct in Duplex DNA 98 2001
1HZ2 P.A.Dooley, D.Tsarouhtsis, G.A.Korbel, L.V.Nechev, J.Shearer, I.S.Zegar, C.M.Harris, M.P.Stone, T.M.Harris 1730 J.Am.Chem.Soc. Structural Studies of an Oligodeoxynucleotide Containing a Trimethylene Interstrand Cross-Link in a 5'-(Cpg) Motif: Model of a Malondialdehyde Cross-Link 123 2001
1HZS A.B.Eldrup, B.B.Nielsen, G.Haaima, H.Rasmussen, J.S.Kastrup, C.Christensen, P.E.Nielsen n/a To be Published 1,8-Naphthyridin-2(1H)-Ones. Novel Bi-and Tricyclic Analogues of Thymine in Peptide Nucleic Acids (Pna) n/a n/a
1I0T V.Tereshko, C.J.Wilds, G.Minasov, T.P.Prakash, M.A.Maier, A.Howard, Z.Wawrzak, M.Manoharan, M.Egli 1208 Nucleic Acids Res. Detection of Alkali Metal Ions in DNA Crystals Using State-of-the-Art X-Ray Diffraction Experiments 29 2001
1I1T T.Nishinaka, A.Shinohara, Y.Ito, S.Yokoyama, T.Shibata 11071 Proc.Nat.Acad.Sci.USA Base Pair Switching by Interconversion of Sugar Puckers in DNA Extended by Proteins of Reca-Family: A Model for Homology Search in Homologous Genetic Recombination 95 1998
1I1U T.Nishinaka, A.Shinohara, Y.Ito, S.Yokoyama, T.Shibata 11071 Proc.Nat.Acad.Sci.USA Base Pair Switching by Interconversion of Sugar Puckers in DNA Extended by Proteins of Reca-Family: A Model for Homology Search in Homologous Genetic Recombination 95 1998
1I1V T.Nishinaka, A.Shinohara, Y.Ito, S.Yokoyama, T.Shibata 11071 Proc.Nat.Acad.Sci.USA Base Pair Switching by Interconversion of Sugar Puckers in DNA Extended by Proteins of Reca-Family: A Model for Homology Search in Homologous Genetic Recombination 95 1998
1I34 V.Kuryavyi, A.Majumdar, A.Shallop, N.Chernichenko, E.Skripkin, R.Jones, D.J.Patel 181 J.Mol.Biol. A Double Chain Reversal Loop and Two Diagonal Loops Define the Architecture of a Unimolecular DNA Quadruplex Containing a Pair of Stacked G(Syn)-G(Syn)-G(Anti)-G(Anti) Tetrads Flanked by a G-(T-T) Triad and a T-T-T Triple 310 2001
1I3T M.T.Hossain, T.Chatake, T.Hikima, M.Tsunoda, T.Sunami, Y.Ueno, A.Matsuda, A.Takenaka 9 J.Biochem.(Tokyo) Crystallographic Studies on Damaged Dnas, III. N4-Methoxycytosine Can Form Both Watson-Crick Type and Wobble Base Pairs in a B-Form Duplex 130 2001
1I3W H.Robinson, Y.-G.Gao, X.-L.Yang, R.Sanishvili, A.Joachimiak, A.H.-J.Wang 5587 Biochemistry Crystallographic Analysis of a Novel Complex of Actinomycin D Bound to the DNA Decamer Cgatcgatcg 40 2001
1I5V A.Favier, M.Blackledge, J.P.Simorre, S.Crouzy, V.Dabouis, A.Gueiffier, D.Marion, J.C.Debousy 8717 Biochemistry Solution Structure of 2-(Pyrido[1,2-E]Purin-4-Yl)Amino-Ethanol Intercalated in the DNA Duplex D(Cgatcg)2 40 2001
1I7V Z.Li, P.J.Tamura, A.S.Wilkinson, C.M.Harris, T.M.Harris, M.P.Stone 6743 Biochemistry Intercalation of the (1R, 2S, 3R, 4S)-N6-[1-(1,2,3,4-Tetrahydro-2,3,4-Trihydroxybenz[A]Anthracenyl)]-2'-Deoxyadenosyl Adduct in the N-Ras Codon 61 Sequence: DNA Sequence Effects 40 2001
1ICK Z.Dauter, D.A.Adamiak 990 Acta Crystallogr., Sect.D Anomalous Signal of Phosphorus Used for Phasing DNA Oligomer: Importance of Data Redundancy 57 2001
1IEK R.Soliva, V.Monaco, I.Gomez-Pinto, N.J.Meeuwenoord, G.A.Van Der Marel, J.H.Van Boom, C.Gonzalez, M.Orozco 2973 Nucleic Acids Res. Solution Structure of a DNA Duplex with a Chiral Alkyl Phosphonate Moiety 29 2001
1IEY R.Soliva, V.Monaco, I.Gomez-Pinto, N.J.Meeuwenoord, G.A.Van Der Marel, J.H.Van Boom, C.Gonzalez, M.Orozco 2973 Nucleic Acids Res. Solution Structure of a DNA Duplex with a Chiral Alkyl Phosphonate Moiety 29 2001
1IH1 J.M.Vargason, K.Henderson, P.S.Ho 7265 Proc.Nat.Acad.Sci.USA A Crystallographic Map of the Transition from B-DNA to A-DNA 98 2001
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1IMR I.Berger, L.Su, J.R.Spitzner, C.Kang, T.G.Burke, A.Rich 4488 Nucleic Acids Res Molecular structure of the halogenated anti-cancer drug iododoxorubicin complexed with d(TGTACA) and d(CGATCG). 23 1995
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1JDG P.Pradhan, S.Tirumala, X.Liu, J.M.Sayer, D.M.Jerina, H.J.C.Yeh 5870 Biochemistry Solution Structure of a Trans-Opened (10S)-Da Adduct of (+)-(7S,8R,9S,10R)-7,8-Dihydroxy-9,10-Epoxy-7,8,9,10-Tetrahydrobenzo[A]Pyrene in a Fully Complementary DNA Duplex: Evidence for a Major Syn Conformation 40 2001
1JGR S.B.Howerton, C.C.Sines, D.Vanderveer, L.D.Williams 10023 Biochemistry Locating Monovalent Cations in the Grooves of B-DNA 40 2001
1JJP N.Zhang, A.Gorin, A.Majumdar, A.Kettani, N.Chernichenko, E.Skripkin, D.J.Patel 1063 J.Mol.Biol. V-Shaped Scaffold: A New Architectural Motif Identified in an A.(G.G.G.G) Pentad-Containing Dimeric DNA Quadruplex Involving Stacked G(Anti).G(Anti).G(Anti).G(Syn) Tetrads 311 2001
1JO1 G.Subramaniam, M.M.Paz, G.S.Kumar, A.Das, Y.Palom, C.C.Clement, D.J.Patel, M.Tomasz 10473 Biochemistry Solution Structure of a Guanine-N7-Linked Complex of the Mitomycin C Metabolite 2,7-Diaminomitosene and DNA. Basis of Sequence Selectivity 40 2001
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206D L.W.Tari, A.S.Secco 2065 Nucleic Acids Res Base-pair opening and spermine binding--B-DNA features displayed in the crystal structure of a gal operon fragment: implications for protein-DNA recognition. 23 1995
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210D G.N.Parkinson, G.M.Arvanitis, L.Lessinger, S.L.Ginell, R.Jones, B.Gaffney, H.M.Berman 15487 Biochemistry Crystal and molecular structure of a new Z-DNA crystal form: d[CGT(2-NH2-A)CG] and its platinated derivative. 34 1995
211D G.N.Parkinson, G.M.Arvanitis, L.Lessinger, S.L.Ginell, R.Jones, B.Gaffney, H.M.Berman 15487 Biochemistry Crystal and molecular structure of a new Z-DNA crystal form: d[CGT(2-NH2-A)CG] and its platinated derivative. 34 1995
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214D C.H.Gotfredsen, H.P.Spielmann, J.Wengel, J.P.Jacobsen 680 Bioconjug Chem Structure of a DNA duplex containing a single 2'-O-methyl-beta-D-araT: combined use of NMR, restrained molecular dynamics, and full relaxation matrix refinement. 7 1996
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218D J.Vojtechovsky, M.D.Eaton, B.Gaffney, R.Jones, H.M.Berman 16632 Biochemistry Structure of a new crystal form of a DNA dodecamer containing T.(O6Me)G base pairs. 34 1995
220D Y.G.Gao, H.Robinson, J.H.van Boom, A.H.Wang 559 Biophys J n/a 69 1995
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229D M.M.Basti, J.W.Stuart, A.T.Lam, R.Guenther, P.F.Agris 38 Nat Struct Biol Design, biological activity and NMR-solution structure of a DNA analogue of yeast tRNA(Phe) anticodon domain. 3 1996
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231D L.A.Lipscomb, F.X.Zhou, S.R.Presnell, R.J.Woo, M.E.Peek, R.R.Plaskon, L.D.Williams 2818 Biochemistry Structure of DNA-porphyrin complex. 35 1996
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253D B.H.M.Mooers, P.S.Ho n/a To be Published Crystal Structure of the B-DNA Nonamer D(Gcgtacgcg) with a Novel D[G(G.C)] Base-Triplet Involving the Minor Groove n/a 1996
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265D B.L.Partridge, S.A.Salisbury n/a To be Published n/a n/a 1996
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268D B.L.Partridge, S.A.Salisbury n/a To be Published n/a n/a 1996
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309D H.Qiu, J.C.Dewan, N.C.Seeman 881 J Mol Biol A DNA decamer with a sticky end: the crystal structure of d-CGACGATCGT. 267 1997
311D G.R.Clark, D.W.Boykin, A.Czarny, S.Neidle 1510 Nucleic Acids Res. Structure of a Bis-Amidinium Derivative of Hoechst 33258 Complexed to Dodecanucleotide D(Cgcgaattcgcg)2: The Role of Hydrogen Bonding in Minor Groove Drug-DNA Recognition 25 1997
312D B.H.Mooers, B.F.Eichman, P.S.Ho 796 J Mol Biol The structures and relative stabilities of d(G x G) reverse Hoogsteen, d(G x T) reverse wobble, and d(G x C) reverse Watson-Crick base-pairs in DNA crystals. 269 1997
313D B.H.Mooers, B.F.Eichman, P.S.Ho 796 J Mol Biol The structures and relative stabilities of d(G x G) reverse Hoogsteen, d(G x T) reverse wobble, and d(G x C) reverse Watson-Crick base-pairs in DNA crystals. 269 1997
314D B.H.Mooers, B.F.Eichman, P.S.Ho 796 J Mol Biol The structures and relative stabilities of d(G x G) reverse Hoogsteen, d(G x T) reverse wobble, and d(G x C) reverse Watson-Crick base-pairs in DNA crystals. 269 1997
316D F.Takusagawa, K.T.Takusagawa, R.G.Carlson, R.F.Weaver 1197 Bioorg Med Chem Selectivity of F8-actinomycin D for RNA:DNA hybrids and its anti-leukemia activity. 5 1997
317D D.B.Tippin, M.Sundaralingam 997 Acta Crystallogr.,Sect.D Structure of D(Cctaggg): Comparison with Nine Isomorphous Octamer Sequences Reveals Four Distinct Patterns of Sequence-Dependent Intermolecular Interactions 52 1996
318D D.B.Tippin, M.Sundaralingam 1171 J Mol Biol Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. 267 1997
319D D.B.Tippin, M.Sundaralingam 1171 J Mol Biol Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. 267 1997
320D D.B.Tippin, M.Sundaralingam 1171 J Mol Biol Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. 267 1997
321D D.B.Tippin, M.Sundaralingam 1171 J Mol Biol Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. 267 1997
322D D.B.Tippin, M.Sundaralingam 1171 J Mol Biol Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. 267 1997
323D D.B.Tippin, M.Sundaralingam 1171 J Mol Biol Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. 267 1997
324D D.B.Tippin, M.Sundaralingam 1171 J Mol Biol Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. 267 1997
325D D.B.Tippin, M.Sundaralingam 1171 J Mol Biol Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. 267 1997
326D D.B.Tippin, M.Sundaralingam 1171 J Mol Biol Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA. 267 1997
327D D.B.Tippin, B.Ramakrishnan, M.Sundaralingam 247 J Mol Biol Methylation of the Z-DNA decamer d(GC)5 potentiates the formation of A-DNA: crystal structure of d(Gm5CGm5CGCGCGC). 270 1997
328D C.J.Squire, G.R.Clark, W.A.Denny 4072 Nucleic Acids Res. Minor Groove Binding of a Bis-Quarternary Ammonium Compound: The Crystal Structure of Sn7167 Bound to D(Cgcgaattcgcg)2 25 1997
329D C.Mayer-Jung, D.Moras, Y.Timsit 328 J Mol Biol Effect of cytosine methylation on DNA-DNA recognition at CpG steps. 270 1997
330D Y.Timsit, E.Vilbois, D.Moras 167 Nature Base-pairing shift in the major groove of (CA)n tracts by B-DNA crystal structures. 354 1991
331D B.Pan, C.Ban, M.C.Wahl, M.Sundaralingam 1553 Biophys J Crystal structure of d(GCGCGCG) with 5'-overhang G residues. 73 1997
334D M.L.Kopka, D.S.Goodsell, G.W.Han, T.K.Chiu, J.W.Lown, R.E.Dickerson 1033 Structure Defining GC-specificity in the minor groove: side-by-side binding of the di-imidazole lexitropsin to C-A-T-G-G-C-C-A-T-G. 5 1997
335D C.M.Nunn, S.Neidle 577 Acta Crystallogr D Biol Crystallogr Structure of the DNA decamer d(GGCAATTGCG) contains both major- and minor-groove binding G.(G.C) base triplets. 54 1998
336D H.Ohishi, N.Terasoma, I.Nakanishi, G.van der Marel, J.H.van Boom, A.Rich, A.H.Wang, T.Hakoshima, K.Tomita 291 FEBS Lett Interaction between left-handed Z-DNA and polyamine - 3. The crystal structure of the d(CG)3 and thermospermine complex. 398 1996
337D B.H.M.Mooers, B.F.Eichman, P.S.Ho n/a To be Published Structural Parameters from Single-Crystal Structures for Accurate Models of A- DNA n/a n/a
338D B.H.M.Mooers, B.F.Eichman, P.S.Ho n/a To be Published Structural Parameters from Single-Crystal Structures for Accurate Models of A- DNA n/a n/a
339D B.H.M.Mooers, B.F.Eichman, P.S.Ho n/a To be Published Structural Parameters from Single-Crystal Structures for Accurate Models of A- DNA n/a n/a
340D B.H.M.Mooers, B.F.Eichman, P.S.Ho n/a To be Published Structural Parameters from Single-Crystal Structures for Accurate Models of A- DNA n/a n/a
341D B.H.M.Mooers, B.F.Eichman, P.S.Ho n/a To be Published Structural Parameters from Single-Crystal Structures for Accurate Models of A- DNA n/a n/a
342D B.H.M.Mooers, B.F.Eichman, P.S.Ho n/a To be Published Structural Parameters from Single-Crystal Structures for Accurate Models of A- DNA n/a n/a
343D B.H.M.Mooers, B.F.Eichman, P.S.Ho n/a To be Published Structural Parameters from Single-Crystal Structures for Accurate Models of A- DNA n/a n/a
344D A.K.Todd, A.Adams, H.R.Powell, D.J.Wilcock, J.H.Thorpe, A.Lausi, F.Zanini, L.P.Wakelin, C.J.Cardin 729 Acta Crystallogr D Biol Crystallogr Determination by MAD-DM of the structure of the DNA duplex d[ACGTACG(5-BrU)]2 at 1.46 A and 100 K. 55 1999
345D B.H.M.Mooers, B.F.Eichman, P.S.Ho n/a To be Published Structural Parameters from Single-Crystal Structures for Accurate Models of A- DNA n/a n/a
346D B.H.M.Mooers, B.F.Eichman, P.S.Ho n/a To be Published Structural Parameters from Single-Crystal Structures for Accurate Models of A- DNA n/a n/a
351D P.Karthe, N.Gautham 501 Acta Crystallogr D Biol Crystallogr Structure of d(CACGCG).d(CGCGTG) in crystals grown in the presence of ruthenium III hexammine chloride. 54 1998
352D K.Phillips, Z.Dauter, A.I.Murchie, D.M.Lilley, B.Luisi 171 J Mol Biol The crystal structure of a parallel-stranded guanine tetraplex at 0.95 A resolution. 273 1997
355D X.Shui, L.McFail-Isom, G.G.Hu, L.D.Williams 8341 Biochemistry The B-DNA dodecamer at high resolution reveals a spine of water on sodium. 37 1998
358D X.Chen, S.N.Mitra, S.T.Rao, K.Sekar, M.Sundaralingam 5464 Nucleic Acids Res. A Novel End-to-End Binding of Two Netropsins to the DNA Decamers D(Ccccciiiii) 2, D(Cccbr5Cciiiii)2, D(Cbr5Cccciiiii)2 26 1998
360D A.Guerri, I.J.Simpson, S.Neidle 2873 Nucleic Acids Res. Visualization of Extensive Water Ribbons and Networks in a DNA Minor-Groove Drug Complex 26 1998
362D A.Harper, J.A.Brannigan, M.Buck, L.Hewitt, R.J.Lewis, M.H.Moore, B.Schneider 1273 Acta Crystallogr D Biol Crystallogr Structure of d(TGCGCA)2 and a comparison to other DNA hexamers. 54 1998
363D V.Tereshko, S.Gryaznov, M.Egli 269 J.Am.Chem.Soc. Consequences of Replacing the DNA 3'-Oxygen by an Amino Group: High-Resolution Crystal Structure of a Fully Modified N3'--> P5' Phosphoramidate DNA Dodecamer Duplex 120 1998
365D C.L.Kielkopf, E.E.Baird, P.B.Dervan, D.C.Rees 104 Nat Struct Biol Structural basis for G.C recognition in the DNA minor groove. 5 1998
366D A.K.Todd, A.Adams, J.H.Thorpe, W.A.Denny, L.P.Wakelin, C.J.Cardin 536 J Med Chem Major groove binding and 'DNA-induced' fit in the intercalation of a derivative of the mixed topoisomerase I/II poison N-(2-(dimethylamino)ethyl)acridine-4-carboxamide (DACA) into DNA: X-ray structure complexed to d(CG(5-BrU)ACG)2 at 1.3-A resolution. 42 1999
368D L.G.Fernandez, J.A.Subirana, N.Verdaguer, D.Pyshnyi, L.Campos, L.Malinina 151 J Biomol Struct Dyn Structural variability of A-DNA in crystals of the octamer d. 15 1997
369D L.G.Fernandez, J.A.Subirana, N.Verdaguer, D.Pyshnyi, L.Campos, L.Malinina 151 J Biomol Struct Dyn Structural variability of A-DNA in crystals of the octamer d. 15 1997
370D L.G.Fernandez, J.A.Subirana, N.Verdaguer, D.Pyshnyi, L.Campos, L.Malinina 151 J Biomol Struct Dyn Structural variability of A-DNA in crystals of the octamer d. 15 1997
371D L.G.Fernandez, J.A.Subirana, N.Verdaguer, D.Pyshnyi, L.Campos, L.Malinina 151 J Biomol Struct Dyn Structural variability of A-DNA in crystals of the octamer d. 15 1997
372D L.G.Fernandez, J.A.Subirana, N.Verdaguer, D.Pyshnyi, L.Campos, L.Malinina 151 J Biomol Struct Dyn Structural variability of A-DNA in crystals of the octamer d. 15 1997
375D X.Chen, S.N.Mitra, S.T.Rao, K.Sekar, M.Sundaralingam 5464 Nucleic Acids Res A novel end-to-end binding of two netropsins to the DNA decamers d(CCCCCIIIII)2, d(CCCBr5CCIIIII)2and d(CBr5CCCCIIIII)2. 26 1998
376D W.Shepard, W.B.T.Cruse, R.Fourme, E.Delafortelle, T.Prange 849 Structure (London) A Zipper-Like Duplex in DNA: The Crystal Structure of D(Gcgaaagct) at 2.1 A Resolution 6 1998
378D S.N.Mitra, M.C.Wahl, M.Sundaralingam 602 Acta Crystallogr D Biol Crystallogr Structure of the side-by-side binding of distamycin to d(GTATATAC)2. 55 1999
380D R.Dutta, Y.G.Gao, W.Priebe, A.H.Wang 3001 Nucleic Acids Res Binding of the modified daunorubicin WP401 adjacent to a T-G base pair induces the reverse Watson-Crick conformation: crystal structures of the WP401-TGGCCG and WP401-CGG[br5C]CG complexes. 26 1998
381D R.Dutta, Y.G.Gao, W.Priebe, A.H.Wang 3001 Nucleic Acids Res Binding of the modified daunorubicin WP401 adjacent to a T-G base pair induces the reverse Watson-Crick conformation: crystal structures of the WP401-TGGCCG and WP401-CGG[br5C]CG complexes. 26 1998
382D C.Mayer-Jung, D.Moras, Y.Timsit 2709 Embo J. Hydration and Recognition of Methylated Cpg Steps in DNA 17 1998
383D C.Mayer-Jung, D.Moras, Y.Timsit, C.Mayer-Jung, D.Moras, Y.Timsit 2709 Embo J. Hydration and Recognition of Methylated Cpg Steps in DNA 17 1998
384D C.Mayer-Jung, D.Moras, Y.Timsit 2709 Embo J. Hydration and Recognition of Methylated Cpg Steps in DNA 17 1998
385D A.Ettorre, M.Cirilli, G.Ughetto 350 Eur.J.Biochem. Degradation of the Morpholino Ring in the Crystal Structure of Cyanomorpholinodoxorubicin Complexed with D(Cgatcg) 258 1998
386D S.M.Gasper, B.Armitage, X.Shui, G.G.Hu, C.Yu, G.Schuster, L.D.Williams n/a To be Published Three-Dimensional Structure and Reactivity of a Photochemical Cleavage Agent Bound to DNA n/a n/a
388D I.Berger, V.Tereshko, H.Ikeda, V.E.Marquez, M.Egli 2473 Nucleic Acids Res Crystal structures of B-DNA with incorporated 2'-deoxy-2'-fluoro-arabino-furanosyl thymines: implications of conformational preorganization for duplex stability. 26 1998
389D I.Berger, V.Tereshko, H.Ikeda, V.E.Marquez, M.Egli 2473 Nucleic Acids Res Crystal structures of B-DNA with incorporated 2'-deoxy-2'-fluoro-arabino-furanosyl thymines: implications of conformational preorganization for duplex stability. 26 1998
390D L.Malinina, V.Tereshko, E.Ivanova, J.A.Subirana, V.Zarytova, Y.Nekrasov 2482 Biophys J Structural variability and new intermolecular interactions of Z-DNA in crystals of d(pCpGpCpGpCpG). 74 1998
391D L.Malinina, V.Tereshko, E.Ivanova, J.A.Subirana, V.Zarytova, Y.Nekrasov 2482 Biophys J Structural variability and new intermolecular interactions of Z-DNA in crystals of d(pCpGpCpGpCpG). 74 1998
392D L.Malinina, V.Tereshko, E.Ivanova, J.A.Subirana, V.Zarytova, Y.Nekrasov 2482 Biophys J Structural variability and new intermolecular interactions of Z-DNA in crystals of d(pCpGpCpGpCpG). 74 1998
395D C.Ban, B.Ramakrishnan, M.Sundaralingam n/a To be Published Crystal Structures of Two Isomorphous A-DNA Decamers D(Gtacgcgtac) and D( Ggccgcggcc) n/a n/a
396D C.Ban, B.Ramakrishnan, M.Sundaralingam n/a To be Published Crystal Structures of Two Isomorphous A-DNA Decamers D(Gtacgcgtac) and D( Ggccgcggcc) n/a n/a
399D L.Malinina, L.G.Fernandez, T.Huynh-Dinh, J.A.Subirana 1679 J Mol Biol Structure of the d(CGCCCGCGGGCG) dodecamer: a kinked A-DNA molecule showing some B-DNA features. 285 1999
3ANA H.Lauble, R.Frank, H.Blocker, U.Heinemann 7799 Nucleic Acids Res Three-dimensional structure of d(GGGATCCC) in the crystalline state. 16 1988
3BNA A.V.Fratini, M.L.Kopka, H.R.Drew, R.E.Dickerson 14686 J Biol Chem Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG. 257 1982
3DNB G.G.Prive, K.Yanagi, R.E.Dickerson 177 J Mol Biol Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G. 217 1991
3KBD C.Tisne, B.Hartmann, M.Delepierre 3883 Biochemistry NF-Kb Binding Mechanism: A Nuclear Magnetic Resonance and Modeling Study of a Ggg->Ctc Mutation 38 1999
3REC T.Nishinaka, Y.Ito, S.Yokoyama, T.Shibata 6623 Proc Natl Acad Sci U S A An extended DNA structure through deoxyribose-base stacking induced by RecA protein. 94 1997
3ZNA A.J.Wang, G.J.Quigley, F.J.Kolpak, G.van der Marel, J.H.van Boom, A.Rich 171 Science Left-handed double helical DNA: variations in the backbone conformation. 211 1981
400D B.F.Eichman, G.P.Schroth, B.E.Basham, P.S.Ho 543 Nucleic Acids Res The intrinsic structure and stability of out-of-alternation base pairs in Z-DNA. 27 1999
401D M.Luo, J.B.Finley n/a n/a Structure of a DNA in Low Salt Conditions D(Gaccgcggtc) n/a n/a
407D C.L.Kielkopf, S.White, J.W.Szewczyk, J.M.Turner, E.E.Baird, P.B.Dervan, D.C.Rees 111 Science A structural basis for recognition of A.T and T.A base pairs in the minor groove of B-DNA. 282 1998
408D C.L.Kielkopf, S.White, J.W.Szewczyk, J.M.Turner, E.E.Baird, P.B.Dervan, D.C.Rees 111 Science A structural basis for recognition of A.T and T.A base pairs in the minor groove of B-DNA. 282 1998
414D G.Savitha, M.A.Viswamitra 1136 Acta Crystallogr D Biol Crystallogr An A-DNA structure with two independent duplexes in the asymmetric unit. 0 1999
415D Y.G.Gao, H.Robinson, Y.Guan, Y.C.Liaw, J.H.van Boom, G.A.van der Marel, A.H.Wang 69 J Biomol Struct Dyn Molecular structure of two crystal forms of cyclic triadenylic acid at 1A resolution. 16 1998
416D Y.G.Gao, H.Robinson, Y.Guan, Y.C.Liaw, J.H.van Boom, G.A.van der Marel, A.H.Wang 69 J Biomol Struct Dyn Molecular structure of two crystal forms of cyclic triadenylic acid at 1A resolution. 16 1998
423D H.Rozenberg, D.Rabinovich, F.Frolow, R.S.Hegde, Z.Shakked 15194 Proc.Nat.Acad.Sci.USA Structural Code for DNA Recognition Revealed in Crystal Structures of Papillomavirus E2-DNA Targets 95 1998
424D H.Rozenberg, D.Rabinovich, F.Frolow, R.S.Hegde, Z.Shakked 15194 Proc.Nat.Acad.Sci.USA Structural Code for DNA Recognition Revealed in Crystal Structures of Papillomavirus E2-DNA Targets 95 1998
425D H.Rozenberg, D.Rabinovich, F.Frolow, R.S.Hegde, Z.Shakked 15194 Proc.Nat.Acad.Sci.USA Structural Code for DNA Recognition Revealed in Crystal Structures of Papillomavirus E2-DNA Targets 95 1998
427D G.Schuerman, L.Van Meervelt 232 J.Am.Chem.Soc. Conformational Flexibility of the DNA Backbone. 122 2000
428D X.Shui, C.C.Sines, L.McFail-Isom, D.VanDerveer, L.D.Williams 16877 Biochemistry Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations. 37 1998
431D D.Vlieghe, J.P.Turkenburg, L.Van Meervelt 1495 Acta Crystallogr., Sect.D B-DNA at Atomic Resolution Reveals Extended Hydration Patterns 55 1999
432D D.Vlieghe, J.Sponer, L.Van Meervelt 16443 Biochemistry Crystal Structure of D(Ggccaattgg) Complexed with Dapi Reveals Novel Binding Mode 38 1999
436D V.Tereshko, G.Minasov, M.Egli 470 J.Am.Chem.Soc. The Dickerson-Drew B-DNA Dodecamer Revisited-at Atomic Resolution 121 1999
440D Y.G.Gao, H.Robinson, A.H.Wang 413 Eur J Biochem High-resolution A-DNA crystal structures of d(AGGGGCCCCT). An A-DNA model of poly(dG) x poly(dC). 261 1999
441D Y.-G.Gao, H.H.Robinson, A.H-J.Wang 413 Eur.J.Biochem. High Resolution A-DNA Crystal Stryctures of D(Aggggcccct): An A-DNA Model of Poly(Dg).Poly(Dc) 261 1999
442D C.J.Squire, L.J.Baker, G.R.Clark, R.F.Martin, J.White 1252 Nucleic Acids Res. Structures of M-Iodo Hoechst-DNA Complexes in Crystals with Reduced Solvent Content: Implications for Minor Goove Binder Drug Design 28 2000
443D C.J.Squire, L.J.Baker, G.R.Clark, R.F.Martin, J.White 1252 Nucleic Acids Res. Structures of M-Iodo Hoechst-DNA Complexes in Crystals with Reduced Solvent Content: Implications for Minor Goove Binder Drug Design 28 2000
444D C.J.Squire, L.J.Baker, G.R.Clark, R.F.Martin, J.White 1252 Nucleic Acids Res. Structures of M-Iodo Hoechst-DNA Complexes in Crystals with Reduced Solvent Content: Implications for Minor Goove Binder Drug Design 28 2000
445D C.J.Squire, L.J.Baker, G.R.Clark, R.F.Martin, J.White 1252 Nucleic Acids Res. Structures of M-Iodo Hoechst-DNA Complexes in Crystals with Reduced Solvent Content: Implications for Minor Goove Binder Drug Design 28 2000
446D N.G.A.Abrescia, L.Malinina, L.G.Fernandez, T.Huynh-Dinh, S.Neidle, J.A.Subirana 1593 Nucleic Acids Res Structure of the oligonucleotide d(CGTATATACG) as a site-specific complex with nickel ions. 27 1999
447D C.J.Squire, L.J.Baker, G.R.Clark, R.F.Martin, J.White 1252 Nucleic Acids Res. Structures of M-Iodo Hoechst-DNA Complexes in Crystals with Reduced Solvent Content: Implications for Minor Goove Binder Drug Design 28 2000
448D C.J.Squire, L.J.Baker, G.R.Clark, R.F.Martin, J.White 1252 Nucleic Acids Res. Structures of M-Iodo Hoechst-DNA Complexes in Crystals with Reduced Solvent Content: Implications for Minor Goove Binder Drug Design 28 2000
449D C.J.Squire, L.J.Baker, G.R.Clark, R.F.Martin, J.White 1252 Nucleic Acids Res. Structures of M-Iodo Hoechst-DNA Complexes in Crystals with Reduced Solvent Content: Implications for Minor Goove Binder Drug Design 28 2000
453D S.Neidle, J.Mann, E.J.Rayner, A.Baron, Y.Opoku-Boahen, I.J.Simpson, N.J.Smith, K.R.Fox, J.A.Hartley, L.R.Kelland 929 J.Chem.Soc.,Chem.Commun. Symmetric Bis-Benzimidazoles, a New Class of Sequence-Selective DNA-Binding Molecules n/a 1999
454D C.L.Kielkopf, K.E.Erkkila, B.P.Hudson, J.K.Barton, D.C.Rees 117 Nat.Struct.Biol. Structure of a Photoactive Rhodium Complex Intercalated Into DNA 7 2000
455D T.K.Chiu, M.Kaczor-Grzeskowiak, R.E.Dickerson 589 J.Mol.Biol. Absence of Minor Groove Monovalent Cations in the Crosslinked Dodecamer C-G-C- G-A-A-T-T-C-G-C-G 292 1999
456D T.Chatake, A.Ono, Y.Ueno, A.Matsuda, A.Takenaka 1215 J.Mol.Biol. Crystallographic Studies on Damaged Dnas. I. An N6-Methoxyadenine Residue Forms a Watson-Crick Pair with a Cytosine Residue in a B-DNA Duplex 294 1999
457D T.Chatake, T.Hikima, A.Ono, Y.Ueno, A.Matsuda, A.Takenaka 1223 J.Mol.Biol. Crystallographic Studies on Damaged Dnas. II. N6-Methoxyadenine Can Present Two Alternative Faces for Watson-Crick Base-Pairing, Leading to Pyrimidine Transition Mutagenesis 294 1999
458D J.Aymami, C.M.Nunn, S.Neidle 2691 Nucleic Acids Res. DNA Minor-Groove Recognition of a Non-Self-Complementary AT-Rich Sequence by a Tris-Benzimidazole Ligand 27 1999
459D J.Aymami, C.M.Nunn, S.Neidle 2691 Nucleic Acids Res. DNA Minor-Groove Recognition of a Non-Self-Complementary AT-Rich Sequence by a Tris-Benzimidazole Ligand 27 1999
460D V.Tereshko, G.Minasov, M.Egli 3590 J.Am.Chem.Soc. A "Hydrat-Ion Spine" in a B-DNA Minor Groove 121 1999
461D V.Tereshko, G.Minasov, M.Egli 3590 J.Am.Chem.Soc. A "Hydrat-Ion Spine" in a B-DNA Minor Groove 121 1999
463D J.Liu, J.A.Subirana 24749 J.Biol.Chem. Structure of D(Cgcgaattcgcg) in the Presence of Ca(2+) Ions 274 1999
465D A.Adams, J.M.Guss, C.A.Collyer, W.A.Denny, L.P.Wakelin 9221 Biochemistry Crystal Structure of the Topoisomerase II Poison 9-Amino-[N-(2-Dimethylamino) Ethyl]Acridine-4-Carboxamide Bound to the DNA Hexanucleotide D(Cgtacg)2 38 1999
467D M.Ortiz-Lombardia, A.Gonzalez, R.Eritja, J.Aymami, F.Azorin, M.Coll 913 Nat.Struct.Biol. Crystal Structure of a DNA Holliday Junction 6 1999
473D N.G.A.Abrescia, L.Malinina, J.A.Subirana 657 J.Mol.Biol. Stacking Interaction of Guanine with Netropsin in the Minor Groove of D( Cgtatatacg)2 294 1999
474D X.Chen, S.N.Mitra, S.T.Rao, K.Sekar, M.Sundaralingam 5464 Nucleic Acids Res A novel end-to-end binding of two netropsins to the DNA decamers d(CCCCCIIIII)2, d(CCCBr5CCIIIII)2and d(CBr5CCCCIIIII)2. 26 1998
476D G.Minasov, V.Tereshko, M.Egli 83 J.Mol.Biol. Atomic-Resolution Crystal Structures of B-DNA Reveal Specific Influences of Divalent Metal Ions on Conformation and Packing 291 1999
477D G.Minasov, V.Tereshko, M.Egli 81 J.Mol.Biol. Atomic-Resolution Crystal Structures of B-DNA Reveal Specific Influences of Divalent Metal Ions on Conformation and Packing 291 1999
478D G.Minasov, V.Tereshko, M.Egli 83 J.Mol.Biol. Atomic-Resolution Crystal Structures of B-DNA Reveal Specific Influence of Divalent Metal Ions on Conformation and Packing 291 1999
482D P.Saminadin, A.Dautant, M.Mondon, B.Langlois D'Estaintot, C.Courseille, G.Precigoux 457 Eur.J.Biochem. Release of the Cyano Moiety in the Crystal Structure of N-Cyanomethyl-N-(2- Methoxyethyl)-Daunomycin Complexed with D(Cgatcg) 267 2000
4BNA A.V.Fratini, M.L.Kopka, H.R.Drew, R.E.Dickerson 14686 J Biol Chem Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG. 257 1982
4DNB C.A.Frederick, G.J.Quigley, G.A.van der Marel, J.H.van Boom, A.H.Wang, A.Rich 17872 J Biol Chem Methylation of the EcoRI recognition site does not alter DNA conformation: the crystal structure of d(CGCGAm6ATTCGCG) at 2.0-A resolution. 263 1988
4KBD C.Tisne, B.Hartmann, M.Delepierre 3883 Biochemistry NF-Kb Binding Mechanism: A Nuclear Magnetic Resonance and Modeling Study of a Ggg->Ctc Mutation 38 1999
5ANA F.Takusagawa 795 J Biomol Struct Dyn The crystal structure of d(GTACGTAC) at 2.25 A resolution: are the A-DNA's always unwound approximately 10 degrees at the C-G steps? 7 1990
5BNA R.M.Wing, P.Pjura, H.R.Drew, R.E.Dickerson 1201 EMBO J The primary mode of binding of cisplatin to a B-DNA dodecamer: C-G-C-G-A-A-T-T-C-G-C-G. 3 1984
5DNB G.G.Prive, K.Yanagi, R.E.Dickerson 177 J.Mol.Biol. Structure of the B-DNA Decamer C-C-A-A-C-G-T-T-G-G and Comparison with Isomorphous Decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G 217 1991
5ZNA A.T.Ansevin, A.H.Wang 6119 Nucleic Acids Res Evidence for a new Z-type left-handed DNA helix: properties of Z(WC)-DNA. 18 1990
6BNA M.L.Kopka, C.Yoon, D.Goodsell, P.Pjura, R.E.Dickerson 553 J Mol Biol Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G. 183 1985
7BNA S.R.Holbrook, R.E.Dickerson, S.-H.Kim 255 Acta Crystallogr.,Sect.B Anisotropic Thermal-Parameter Refinement of the DNA Dodecamer Cgcgaattcgcg by the Segmented Rigid-Body Method 41 1985
8BNA P.E.Pjura, K.Grzeskowiak, R.E.Dickerson 257 J Mol Biol Binding of Hoechst 33258 to the minor groove of B-DNA. 197 1987
9BNA E.Westhof 581 J Biomol Struct Dyn Re-refinement of the B-dodecamer d(CGCGAATTCGCG) with a comparative analysis of the solvent in it and in the Z-hexamer d(5BrCG5BrCG5BrCG). 5 1987
9DNA U.Heinemann, H.Lauble, R.Frank, H.Blocker 9531 Nucleic Acids Res Crystal structure analysis of an A-DNA fragment at 1.8 A resolution: d(GCCCGGGC). 15 1987

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PDB Molecule of the Month November 2001, by David S. Goodsell

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